FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8377, 622 aa
  1>>>pF1KB8377 622 - 622 aa - 622 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4961+/-0.000291; mu= 14.2116+/- 0.018
 mean_var=87.5115+/-17.933, 0's: 0 Z-trim(119.8): 5  B-trim: 1762 in 1/53
 Lambda= 0.137101
 statistics sampled from 34152 (34157) to 34152 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.4), width:  16
 Scan time: 12.890

The best scores are:                                      opt bits E(85289)
NP_004620 (OMIM: 189960,602956,614082) Fanconi ane ( 622) 4117 824.0       0


>>NP_004620 (OMIM: 189960,602956,614082) Fanconi anemia   (622 aa)
 initn: 4117 init1: 4117 opt: 4117  Z-score: 4398.2  bits: 824.0 E(85289):    0
Smith-Waterman score: 4117; 100.0% identity (100.0% similar) in 622 aa overlap (1-622:1-622)

               10        20        30        40        50        60
pF1KB8 MSRQTTSVGSSCLDLWREKNDRLVRQAKVAQNSGLTLRRQQLAQDALEGLRGLLHSLQGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSRQTTSVGSSCLDLWREKNDRLVRQAKVAQNSGLTLRRQQLAQDALEGLRGLLHSLQGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PAAVPVLPLELTVTCNFIILRASLAQGFTEDQAQDIQRSLERVLETQEQQGPRLEQGLRE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PAAVPVLPLELTVTCNFIILRASLAQGFTEDQAQDIQRSLERVLETQEQQGPRLEQGLRE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 LWDSVLRASCLLPELLSALHRLVGLQAALWLSADRLGDLALLLETLNGSQSGASKDLLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LWDSVLRASCLLPELLSALHRLVGLQAALWLSADRLGDLALLLETLNGSQSGASKDLLLL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LKTWSPPAEELDAPLTLQDAQGLKDVLLTAFAYRQGLQELITGNPDKALSSLHEAASGLC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LKTWSPPAEELDAPLTLQDAQGLKDVLLTAFAYRQGLQELITGNPDKALSSLHEAASGLC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 PRPVLVQVYTALGSCHRKMGNPQRALLYLVAALKEGSAWGPPLLEASRLYQQLGDTTAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PRPVLVQVYTALGSCHRKMGNPQRALLYLVAALKEGSAWGPPLLEASRLYQQLGDTTAEL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 ESLELLVEALNVPCSSKAPQFLIEVELLLPPPDLASPLHCGTQSQTKHILASRCLQTGRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ESLELLVEALNVPCSSKAPQFLIEVELLLPPPDLASPLHCGTQSQTKHILASRCLQTGRA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 GDAAEHYLDLLALLLDSSEPRFSPPPSPPGPCMPEVFLEAAVALIQAGRAQDALTLCEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GDAAEHYLDLLALLLDSSEPRFSPPPSPPGPCMPEVFLEAAVALIQAGRAQDALTLCEEL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 LSRTSSLLPKMSRLWEDARKGTKELPYCPLWVSATHLLQGQAWVQLGAQKVAISEFSRCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LSRTSSLLPKMSRLWEDARKGTKELPYCPLWVSATHLLQGQAWVQLGAQKVAISEFSRCL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 ELLFRATPEEKEQGAAFNCEQGCKSDAALQQLRAAALISRGLEWVASGQDTKALQDFLLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ELLFRATPEEKEQGAAFNCEQGCKSDAALQQLRAAALISRGLEWVASGQDTKALQDFLLS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 VQMCPGNRDTYFHLLQTLKRLDRRDEATALWWRLEAQTKGSHEDALWSLPLYLESYLSWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VQMCPGNRDTYFHLLQTLKRLDRRDEATALWWRLEAQTKGSHEDALWSLPLYLESYLSWI
              550       560       570       580       590       600

              610       620  
pF1KB8 RPSDRDAFLEEFRTSLPKSCDL
       ::::::::::::::::::::::
NP_004 RPSDRDAFLEEFRTSLPKSCDL
              610       620  




622 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:23:17 2016 done: Fri Nov  4 12:23:19 2016
 Total Scan time: 12.890 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]