FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8384, 616 aa
  1>>>pF1KB8384 616 - 616 aa - 616 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.9875+/-0.000973; mu= 0.2963+/- 0.058
 mean_var=298.0322+/-61.827, 0's: 0 Z-trim(114.9): 20  B-trim: 341 in 2/51
 Lambda= 0.074292
 statistics sampled from 15454 (15469) to 15454 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.475), width:  16
 Scan time:  4.490

The best scores are:                                      opt bits E(32554)
CCDS994.1 RFX5 gene_id:5993|Hs108|chr1             ( 616) 4133 456.5 4.7e-128


>>CCDS994.1 RFX5 gene_id:5993|Hs108|chr1                  (616 aa)
 initn: 4133 init1: 4133 opt: 4133  Z-score: 2412.5  bits: 456.5 E(32554): 4.7e-128
Smith-Waterman score: 4133; 100.0% identity (100.0% similar) in 616 aa overlap (1-616:1-616)

               10        20        30        40        50        60
pF1KB8 MAEDEPDAKSPKTGGRAPPGGAEAGEPTTLLQRLRGTISKAVQNKVEGILQDVQKFSDND
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MAEDEPDAKSPKTGGRAPPGGAEAGEPTTLLQRLRGTISKAVQNKVEGILQDVQKFSDND
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KLYLYLQLPSGPTTGDKSSEPSTLSNEEYMYAYRWIRNHLEEHTDTCLPKQSVYDAYRKY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 KLYLYLQLPSGPTTGDKSSEPSTLSNEEYMYAYRWIRNHLEEHTDTCLPKQSVYDAYRKY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 CESLACCRPLSTANFGKIIREIFPDIKARRLGGRGQSKYCYSGIRRKTLVSMPPLPGLDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 CESLACCRPLSTANFGKIIREIFPDIKARRLGGRGQSKYCYSGIRRKTLVSMPPLPGLDL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 KGSESPEMGPEVTPAPRDELVEAACALTCDWAERILKRSFSSIVEVARFLLQQHLISARS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 KGSESPEMGPEVTPAPRDELVEAACALTCDWAERILKRSFSSIVEVARFLLQQHLISARS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 AHAHVLKAMGLAEEDEHAPRERSSKPKNGLENPEGGAHKKPERLAQPPKDLEARTGAGPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 AHAHVLKAMGLAEEDEHAPRERSSKPKNGLENPEGGAHKKPERLAQPPKDLEARTGAGPL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 ARGERKKSVVESSAPGANNLQVNALVARLPLLLPRAPRSLIPPIPVSPPILAPRLSSGAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 ARGERKKSVVESSAPGANNLQVNALVARLPLLLPRAPRSLIPPIPVSPPILAPRLSSGAL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 KVATLPLSSRAGAPPAAVPIINMILPTVPALPGPGPGPGRAPPGGLTQPRGTENREVGIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 KVATLPLSSRAGAPPAAVPIINMILPTVPALPGPGPGPGRAPPGGLTQPRGTENREVGIG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 GDQGPHDKGVKRTAEVPVSEASGQAPPAKAAKQDIEDTASDAKRKRGRPRKKSGGSGERN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 GDQGPHDKGVKRTAEVPVSEASGQAPPAKAAKQDIEDTASDAKRKRGRPRKKSGGSGERN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 STPLKSAAAMESAQSSRLPWETWGSGGEGNSAGGAERPGPMGEAEKGAVLAQGQGDGTVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 STPLKSAAAMESAQSSRLPWETWGSGGEGNSAGGAERPGPMGEAEKGAVLAQGQGDGTVS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 KGGRGPGSQHTKEAEDKIPLVPSKVSVIKGSRSQKEAFPLAKGEVDTAPQGNKDLKEHVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 KGGRGPGSQHTKEAEDKIPLVPSKVSVIKGSRSQKEAFPLAKGEVDTAPQGNKDLKEHVL
              550       560       570       580       590       600

              610      
pF1KB8 QSSLSQEHKDPKATPP
       ::::::::::::::::
CCDS99 QSSLSQEHKDPKATPP
              610      




616 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:26:34 2016 done: Fri Nov  4 12:26:34 2016
 Total Scan time:  4.490 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]