Result of FASTA (omim) for
pF1KB8387
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8387, 568 aa
1>>>pF1KB8387 568 - 568 aa - 568 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7729+/-0.000447; mu= 16.9388+/- 0.028
mean_var=81.9732+/-16.473, 0's: 0 Z-trim(111.7): 23 B-trim: 144 in 1/50
Lambda= 0.141657
statistics sampled from 20386 (20406) to 20386 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.605), E-opt: 0.2 (0.239), width: 16
Scan time: 7.580
The best scores are: opt bits E(85289)
NP_006336 (OMIM: 604604) zinc transporter 9 [Homo ( 568) 3698 766.0 0
XP_016863143 (OMIM: 604604) PREDICTED: zinc transp ( 591) 3610 748.0 1.9e-215
XP_016870603 (OMIM: 278700,611153) PREDICTED: DNA ( 231) 167 44.1 0.00058
XP_006717341 (OMIM: 278700,611153) PREDICTED: DNA ( 262) 167 44.2 0.00064
NP_000371 (OMIM: 278700,611153) DNA repair protein ( 273) 167 44.2 0.00066
>>NP_006336 (OMIM: 604604) zinc transporter 9 [Homo sapi (568 aa)
initn: 3698 init1: 3698 opt: 3698 Z-score: 4086.4 bits: 766.0 E(85289): 0
Smith-Waterman score: 3698; 99.6% identity (100.0% similar) in 568 aa overlap (1-568:1-568)
10 20 30 40 50 60
pF1KB8 MLPGLAAAAAHRCSWSSLCRLRLRCRAAACNPSDRQEWQNLVTFGSFSNVVPCSHPYIGT
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
NP_006 MLPGLAAAAAHRCSWSSLCRLRLRCRAAACNPSDRQEWQNLVTFGSFSNMVPCSHPYIGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LSQVKLYSTNVQKEGQGSQTLRVEKVPSFETAEGIGAELKAPLKQEPLQVRVKAVLKKRE
::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
NP_006 LSQVKLYSTNVQKEGQGSQTLRVEKVPSFETAEGIGTELKAPLKQEPLQVRVKAVLKKRE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 YGSKYTQNNFITGVRAINEFCLKSSDLEQLRKIRRRSPHEDTESFTVYLRSDVEAKSLEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YGSKYTQNNFITGVRAINEFCLKSSDLEQLRKIRRRSPHEDTESFTVYLRSDVEAKSLEV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 WGSPEALAREKKLRKEAEIEYRERLFRNQKILREYRDFLGNTKPRSRTASVFFKGPGKVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 WGSPEALAREKKLRKEAEIEYRERLFRNQKILREYRDFLGNTKPRSRTASVFFKGPGKVV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 MVAICINGLNCFFKFLAWIYTGSASMFSEAIHSLSDTCNQGLLALGISKSVQTPDPSHPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MVAICINGLNCFFKFLAWIYTGSASMFSEAIHSLSDTCNQGLLALGISKSVQTPDPSHPY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 GFSNMRYISSLISGVGIFMMGAGLSWYHGVMGLLHPQPIESLLWAYCILAGSLVSEGATL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GFSNMRYISSLISGVGIFMMGAGLSWYHGVMGLLHPQPIESLLWAYCILAGSLVSEGATL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 LVAVNELRRNARAKGMSFYKYVMESRDPSTNVILLEDTAAVLGVIIAATCMGLTSITGNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LVAVNELRRNARAKGMSFYKYVMESRDPSTNVILLEDTAAVLGVIIAATCMGLTSITGNP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 LYDSLGSLGVGTLLGMVSAFLIYTNTEALLGRSIQPEQVQRLTELLENDPSVRAIHDVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LYDSLGSLGVGTLLGMVSAFLIYTNTEALLGRSIQPEQVQRLTELLENDPSVRAIHDVKA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 TDLGLGKVRFKAEVDFDGRVVTRSYLEKQDFDQMLQEIQEVKTPEELETFMLKHGENIID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TDLGLGKVRFKAEVDFDGRVVTRSYLEKQDFDQMLQEIQEVKTPEELETFMLKHGENIID
490 500 510 520 530 540
550 560
pF1KB8 TLGAEVDRLEKELKKRNPEVRHVDLEIL
::::::::::::::::::::::::::::
NP_006 TLGAEVDRLEKELKKRNPEVRHVDLEIL
550 560
>>XP_016863143 (OMIM: 604604) PREDICTED: zinc transporte (591 aa)
initn: 3610 init1: 3610 opt: 3610 Z-score: 3989.0 bits: 748.0 E(85289): 1.9e-215
Smith-Waterman score: 3610; 99.5% identity (99.8% similar) in 556 aa overlap (1-556:1-556)
10 20 30 40 50 60
pF1KB8 MLPGLAAAAAHRCSWSSLCRLRLRCRAAACNPSDRQEWQNLVTFGSFSNVVPCSHPYIGT
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
XP_016 MLPGLAAAAAHRCSWSSLCRLRLRCRAAACNPSDRQEWQNLVTFGSFSNMVPCSHPYIGT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LSQVKLYSTNVQKEGQGSQTLRVEKVPSFETAEGIGAELKAPLKQEPLQVRVKAVLKKRE
::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::
XP_016 LSQVKLYSTNVQKEGQGSQTLRVEKVPSFETAEGIGTELKAPLKQEPLQVRVKAVLKKRE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 YGSKYTQNNFITGVRAINEFCLKSSDLEQLRKIRRRSPHEDTESFTVYLRSDVEAKSLEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YGSKYTQNNFITGVRAINEFCLKSSDLEQLRKIRRRSPHEDTESFTVYLRSDVEAKSLEV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 WGSPEALAREKKLRKEAEIEYRERLFRNQKILREYRDFLGNTKPRSRTASVFFKGPGKVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WGSPEALAREKKLRKEAEIEYRERLFRNQKILREYRDFLGNTKPRSRTASVFFKGPGKVV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 MVAICINGLNCFFKFLAWIYTGSASMFSEAIHSLSDTCNQGLLALGISKSVQTPDPSHPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVAICINGLNCFFKFLAWIYTGSASMFSEAIHSLSDTCNQGLLALGISKSVQTPDPSHPY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 GFSNMRYISSLISGVGIFMMGAGLSWYHGVMGLLHPQPIESLLWAYCILAGSLVSEGATL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GFSNMRYISSLISGVGIFMMGAGLSWYHGVMGLLHPQPIESLLWAYCILAGSLVSEGATL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 LVAVNELRRNARAKGMSFYKYVMESRDPSTNVILLEDTAAVLGVIIAATCMGLTSITGNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVAVNELRRNARAKGMSFYKYVMESRDPSTNVILLEDTAAVLGVIIAATCMGLTSITGNP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 LYDSLGSLGVGTLLGMVSAFLIYTNTEALLGRSIQPEQVQRLTELLENDPSVRAIHDVKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LYDSLGSLGVGTLLGMVSAFLIYTNTEALLGRSIQPEQVQRLTELLENDPSVRAIHDVKA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 TDLGLGKVRFKAEVDFDGRVVTRSYLEKQDFDQMLQEIQEVKTPEELETFMLKHGENIID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TDLGLGKVRFKAEVDFDGRVVTRSYLEKQDFDQMLQEIQEVKTPEELETFMLKHGENIID
490 500 510 520 530 540
550 560
pF1KB8 TLGAEVDRLEKELKKRNPEVRHVDLEIL
:::::::::::::: :
XP_016 TLGAEVDRLEKELKVRCIHKNNIMIMAAIFLSTYSTADTKCIHHMHALTHS
550 560 570 580 590
>>XP_016870603 (OMIM: 278700,611153) PREDICTED: DNA repa (231 aa)
initn: 136 init1: 101 opt: 167 Z-score: 192.2 bits: 44.1 E(85289): 0.00058
Smith-Waterman score: 167; 33.7% identity (71.6% similar) in 95 aa overlap (127-216:93-185)
100 110 120 130 140 150
pF1KB8 AELKAPLKQEPLQVRVKAVLKKREYGSKYTQNNFITGVRAINEFCLKSSDLEQ----LRK
....:: ..: .:. ::. :::. :.
XP_016 CEECGKEFMDSYLMNHFDLPTCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKF
70 80 90 100 110 120
160 170 180 190 200 210
pF1KB8 IRRRSPHEDTES-FTVYLRSDVEAKSLEVWGSPEALAREKKLRKEAEIEYRERLFRNQKI
: ...::.. . . .::. .. .::::::: ::: . :..:.: . ..... : .:
XP_016 IVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGSQEALEEAKEVRQENREKMKQKKF--DKK
130 140 150 160 170 180
220 230 240 250 260 270
pF1KB8 LREYRDFLGNTKPRSRTASVFFKGPGKVVMVAICINGLNCFFKFLAWIYTGSASMFSEAI
..: :
XP_016 VKELRRAVRSSVWKRETIVHQHEYGPEENLEDDMYRKTCTMCGHELTYEKM
190 200 210 220 230
>>XP_006717341 (OMIM: 278700,611153) PREDICTED: DNA repa (262 aa)
initn: 136 init1: 101 opt: 167 Z-score: 191.4 bits: 44.2 E(85289): 0.00064
Smith-Waterman score: 167; 33.7% identity (71.6% similar) in 95 aa overlap (127-216:135-227)
100 110 120 130 140 150
pF1KB8 AELKAPLKQEPLQVRVKAVLKKREYGSKYTQNNFITGVRAINEFCLKSSDLEQ----LRK
....:: ..: .:. ::. :::. :.
XP_006 CEECGKEFMDSYLMNHFDLPTCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKF
110 120 130 140 150 160
160 170 180 190 200 210
pF1KB8 IRRRSPHEDTES-FTVYLRSDVEAKSLEVWGSPEALAREKKLRKEAEIEYRERLFRNQKI
: ...::.. . . .::. .. .::::::: ::: . :..:.: . ..... : .:
XP_006 IVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGSQEALEEAKEVRQENREKMKQKKF--DKK
170 180 190 200 210 220
220 230 240 250 260 270
pF1KB8 LREYRDFLGNTKPRSRTASVFFKGPGKVVMVAICINGLNCFFKFLAWIYTGSASMFSEAI
..: :
XP_006 VKELRRAVRSSVWKRETIVHQHEYGPEENLEDDMYPLKYQ
230 240 250 260
>>NP_000371 (OMIM: 278700,611153) DNA repair protein com (273 aa)
initn: 136 init1: 101 opt: 167 Z-score: 191.1 bits: 44.2 E(85289): 0.00066
Smith-Waterman score: 167; 33.7% identity (71.6% similar) in 95 aa overlap (127-216:135-227)
100 110 120 130 140 150
pF1KB8 AELKAPLKQEPLQVRVKAVLKKREYGSKYTQNNFITGVRAINEFCLKSSDLEQ----LRK
....:: ..: .:. ::. :::. :.
NP_000 CEECGKEFMDSYLMNHFDLPTCDNCRDADDKHKLITKTEAKQEYLLKDCDLEKREPPLKF
110 120 130 140 150 160
160 170 180 190 200 210
pF1KB8 IRRRSPHEDTES-FTVYLRSDVEAKSLEVWGSPEALAREKKLRKEAEIEYRERLFRNQKI
: ...::.. . . .::. .. .::::::: ::: . :..:.: . ..... : .:
NP_000 IVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGSQEALEEAKEVRQENREKMKQKKF--DKK
170 180 190 200 210 220
220 230 240 250 260 270
pF1KB8 LREYRDFLGNTKPRSRTASVFFKGPGKVVMVAICINGLNCFFKFLAWIYTGSASMFSEAI
..: :
NP_000 VKELRRAVRSSVWKRETIVHQHEYGPEENLEDDMYRKTCTMCGHELTYEKM
230 240 250 260 270
568 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:27:58 2016 done: Fri Nov 4 12:27:59 2016
Total Scan time: 7.580 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]