FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8388, 582 aa
  1>>>pF1KB8388 582 - 582 aa - 582 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 14.7917+/-0.00111; mu= -21.0365+/- 0.067
 mean_var=647.5702+/-131.894, 0's: 0 Z-trim(118.1): 40  B-trim: 0 in 0/55
 Lambda= 0.050400
 statistics sampled from 18903 (18934) to 18903 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.582), width:  16
 Scan time:  4.040

The best scores are:                                      opt bits E(32554)
CCDS11018.1 MNT gene_id:4335|Hs108|chr17           ( 582) 3962 302.8   8e-82


>>CCDS11018.1 MNT gene_id:4335|Hs108|chr17                (582 aa)
 initn: 3962 init1: 3962 opt: 3962  Z-score: 1582.4  bits: 302.8 E(32554): 8e-82
Smith-Waterman score: 3962; 100.0% identity (100.0% similar) in 582 aa overlap (1-582:1-582)

               10        20        30        40        50        60
pF1KB8 MSIETLLEAARFLEWQAQQQQRAREEQERLRLEQEREQEQKKANSLARLAHTLPVEEPRM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSIETLLEAARFLEWQAQQQQRAREEQERLRLEQEREQEQKKANSLARLAHTLPVEEPRM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 EAPPLPLSPPAPPPAPPPPLATPAPLTVIPIPVVTNSPQPLPPPPPLPAAAQPLPLAPRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EAPPLPLSPPAPPPAPPPPLATPAPLTVIPIPVVTNSPQPLPPPPPLPAAAQPLPLAPRQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 PALVGAPGLSIKEPAPLPSRPQVPTPAPLLPDSKATIPPNGSPKPLQPLPTPVLTIAPHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PALVGAPGLSIKEPAPLPSRPQVPTPAPLLPDSKATIPPNGSPKPLQPLPTPVLTIAPHP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 GVQPQLAPQQPPPPTLGTLKLAPAEEVKSSEQKKRPGGIGTREVHNKLEKNRRAHLKECF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GVQPQLAPQQPPPPTLGTLKLAPAEEVKSSEQKKRPGGIGTREVHNKLEKNRRAHLKECF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 ETLKRNIPNVDDKKTSNLSVLRTALRYIQSLKRKEKEYEHEMERLAREKIATQQRLAELK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ETLKRNIPNVDDKKTSNLSVLRTALRYIQSLKRKEKEYEHEMERLAREKIATQQRLAELK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 HELSQWMDVLEIDRVLRQTGQPEDDQASTSTASEGEDNIDEDMEEDRAGLGPPKLSHRPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HELSQWMDVLEIDRVLRQTGQPEDDQASTSTASEGEDNIDEDMEEDRAGLGPPKLSHRPQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 PELLKSTLPPPSTTPAPLPPHPHPHPHSVALPPAHLPVQQQQPQQKTPLPAPPPPPAAPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 PELLKSTLPPPSTTPAPLPPHPHPHPHSVALPPAHLPVQQQQPQQKTPLPAPPPPPAAPA
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 QTLVPAPAHLVATAGGGSTVIAHTATTHASVIQTVNHVLQGPGGKHIAHIAPSAPSPAVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QTLVPAPAHLVATAGGGSTVIAHTATTHASVIQTVNHVLQGPGGKHIAHIAPSAPSPAVQ
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 LAPATPPIGHITVHPATLNHVAHLGSQLPLYPQPVAVSHIAHTLSHQQVNGTAGLGPPAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LAPATPPIGHITVHPATLNHVAHLGSQLPLYPQPVAVSHIAHTLSHQQVNGTAGLGPPAT
              490       500       510       520       530       540

              550       560       570       580  
pF1KB8 VMAKPAVGAQVVHHPQLVGQTVLNPVTMVTMPSFPVSTLKLA
       ::::::::::::::::::::::::::::::::::::::::::
CCDS11 VMAKPAVGAQVVHHPQLVGQTVLNPVTMVTMPSFPVSTLKLA
              550       560       570       580  




582 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:28:34 2016 done: Fri Nov  4 12:28:34 2016
 Total Scan time:  4.040 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]