Result of FASTA (omim) for
pF1KB8388
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8388, 582 aa
1>>>pF1KB8388 582 - 582 aa - 582 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 15.4869+/-0.00045; mu= -25.2953+/- 0.028
mean_var=752.6338+/-153.769, 0's: 0 Z-trim(126.1): 47 B-trim: 0 in 0/61
Lambda= 0.046750
statistics sampled from 51310 (51375) to 51310 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.602), width: 16
Scan time: 11.440
The best scores are: opt bits E(85289)
NP_064706 (OMIM: 603039) max-binding protein MNT [ ( 582) 3962 282.2 3.2e-75
XP_011522170 (OMIM: 603039) PREDICTED: max-binding ( 590) 3803 271.5 5.5e-72
XP_016880143 (OMIM: 603039) PREDICTED: max-binding ( 301) 2045 152.7 1.7e-36
XP_011522171 (OMIM: 603039) PREDICTED: max-binding ( 301) 2045 152.7 1.7e-36
>>NP_064706 (OMIM: 603039) max-binding protein MNT [Homo (582 aa)
initn: 3962 init1: 3962 opt: 3962 Z-score: 1471.4 bits: 282.2 E(85289): 3.2e-75
Smith-Waterman score: 3962; 100.0% identity (100.0% similar) in 582 aa overlap (1-582:1-582)
10 20 30 40 50 60
pF1KB8 MSIETLLEAARFLEWQAQQQQRAREEQERLRLEQEREQEQKKANSLARLAHTLPVEEPRM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 MSIETLLEAARFLEWQAQQQQRAREEQERLRLEQEREQEQKKANSLARLAHTLPVEEPRM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 EAPPLPLSPPAPPPAPPPPLATPAPLTVIPIPVVTNSPQPLPPPPPLPAAAQPLPLAPRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 EAPPLPLSPPAPPPAPPPPLATPAPLTVIPIPVVTNSPQPLPPPPPLPAAAQPLPLAPRQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 PALVGAPGLSIKEPAPLPSRPQVPTPAPLLPDSKATIPPNGSPKPLQPLPTPVLTIAPHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 PALVGAPGLSIKEPAPLPSRPQVPTPAPLLPDSKATIPPNGSPKPLQPLPTPVLTIAPHP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 GVQPQLAPQQPPPPTLGTLKLAPAEEVKSSEQKKRPGGIGTREVHNKLEKNRRAHLKECF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 GVQPQLAPQQPPPPTLGTLKLAPAEEVKSSEQKKRPGGIGTREVHNKLEKNRRAHLKECF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 ETLKRNIPNVDDKKTSNLSVLRTALRYIQSLKRKEKEYEHEMERLAREKIATQQRLAELK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 ETLKRNIPNVDDKKTSNLSVLRTALRYIQSLKRKEKEYEHEMERLAREKIATQQRLAELK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 HELSQWMDVLEIDRVLRQTGQPEDDQASTSTASEGEDNIDEDMEEDRAGLGPPKLSHRPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 HELSQWMDVLEIDRVLRQTGQPEDDQASTSTASEGEDNIDEDMEEDRAGLGPPKLSHRPQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 PELLKSTLPPPSTTPAPLPPHPHPHPHSVALPPAHLPVQQQQPQQKTPLPAPPPPPAAPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 PELLKSTLPPPSTTPAPLPPHPHPHPHSVALPPAHLPVQQQQPQQKTPLPAPPPPPAAPA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 QTLVPAPAHLVATAGGGSTVIAHTATTHASVIQTVNHVLQGPGGKHIAHIAPSAPSPAVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 QTLVPAPAHLVATAGGGSTVIAHTATTHASVIQTVNHVLQGPGGKHIAHIAPSAPSPAVQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 LAPATPPIGHITVHPATLNHVAHLGSQLPLYPQPVAVSHIAHTLSHQQVNGTAGLGPPAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_064 LAPATPPIGHITVHPATLNHVAHLGSQLPLYPQPVAVSHIAHTLSHQQVNGTAGLGPPAT
490 500 510 520 530 540
550 560 570 580
pF1KB8 VMAKPAVGAQVVHHPQLVGQTVLNPVTMVTMPSFPVSTLKLA
::::::::::::::::::::::::::::::::::::::::::
NP_064 VMAKPAVGAQVVHHPQLVGQTVLNPVTMVTMPSFPVSTLKLA
550 560 570 580
>>XP_011522170 (OMIM: 603039) PREDICTED: max-binding pro (590 aa)
initn: 3803 init1: 3803 opt: 3803 Z-score: 1413.4 bits: 271.5 E(85289): 5.5e-72
Smith-Waterman score: 3803; 99.8% identity (100.0% similar) in 558 aa overlap (25-582:33-590)
10 20 30 40 50
pF1KB8 MSIETLLEAARFLEWQAQQQQRAREEQERLRLEQEREQEQKKANSLARLAHTLP
.:::::::::::::::::::::::::::::
XP_011 YVWAQGSGEDRAQGSERLSHLLPPSTRCSSKEQERLRLEQEREQEQKKANSLARLAHTLP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 VEEPRMEAPPLPLSPPAPPPAPPPPLATPAPLTVIPIPVVTNSPQPLPPPPPLPAAAQPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VEEPRMEAPPLPLSPPAPPPAPPPPLATPAPLTVIPIPVVTNSPQPLPPPPPLPAAAQPL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 PLAPRQPALVGAPGLSIKEPAPLPSRPQVPTPAPLLPDSKATIPPNGSPKPLQPLPTPVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PLAPRQPALVGAPGLSIKEPAPLPSRPQVPTPAPLLPDSKATIPPNGSPKPLQPLPTPVL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 TIAPHPGVQPQLAPQQPPPPTLGTLKLAPAEEVKSSEQKKRPGGIGTREVHNKLEKNRRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TIAPHPGVQPQLAPQQPPPPTLGTLKLAPAEEVKSSEQKKRPGGIGTREVHNKLEKNRRA
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB8 HLKECFETLKRNIPNVDDKKTSNLSVLRTALRYIQSLKRKEKEYEHEMERLAREKIATQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HLKECFETLKRNIPNVDDKKTSNLSVLRTALRYIQSLKRKEKEYEHEMERLAREKIATQQ
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB8 RLAELKHELSQWMDVLEIDRVLRQTGQPEDDQASTSTASEGEDNIDEDMEEDRAGLGPPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RLAELKHELSQWMDVLEIDRVLRQTGQPEDDQASTSTASEGEDNIDEDMEEDRAGLGPPK
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB8 LSHRPQPELLKSTLPPPSTTPAPLPPHPHPHPHSVALPPAHLPVQQQQPQQKTPLPAPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LSHRPQPELLKSTLPPPSTTPAPLPPHPHPHPHSVALPPAHLPVQQQQPQQKTPLPAPPP
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB8 PPAAPAQTLVPAPAHLVATAGGGSTVIAHTATTHASVIQTVNHVLQGPGGKHIAHIAPSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPAAPAQTLVPAPAHLVATAGGGSTVIAHTATTHASVIQTVNHVLQGPGGKHIAHIAPSA
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB8 PSPAVQLAPATPPIGHITVHPATLNHVAHLGSQLPLYPQPVAVSHIAHTLSHQQVNGTAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSPAVQLAPATPPIGHITVHPATLNHVAHLGSQLPLYPQPVAVSHIAHTLSHQQVNGTAG
490 500 510 520 530 540
540 550 560 570 580
pF1KB8 LGPPATVMAKPAVGAQVVHHPQLVGQTVLNPVTMVTMPSFPVSTLKLA
::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGPPATVMAKPAVGAQVVHHPQLVGQTVLNPVTMVTMPSFPVSTLKLA
550 560 570 580 590
>>XP_016880143 (OMIM: 603039) PREDICTED: max-binding pro (301 aa)
initn: 2045 init1: 2045 opt: 2045 Z-score: 776.4 bits: 152.7 E(85289): 1.7e-36
Smith-Waterman score: 2045; 100.0% identity (100.0% similar) in 301 aa overlap (282-582:1-301)
260 270 280 290 300 310
pF1KB8 DKKTSNLSVLRTALRYIQSLKRKEKEYEHEMERLAREKIATQQRLAELKHELSQWMDVLE
::::::::::::::::::::::::::::::
XP_016 MERLAREKIATQQRLAELKHELSQWMDVLE
10 20 30
320 330 340 350 360 370
pF1KB8 IDRVLRQTGQPEDDQASTSTASEGEDNIDEDMEEDRAGLGPPKLSHRPQPELLKSTLPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IDRVLRQTGQPEDDQASTSTASEGEDNIDEDMEEDRAGLGPPKLSHRPQPELLKSTLPPP
40 50 60 70 80 90
380 390 400 410 420 430
pF1KB8 STTPAPLPPHPHPHPHSVALPPAHLPVQQQQPQQKTPLPAPPPPPAAPAQTLVPAPAHLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 STTPAPLPPHPHPHPHSVALPPAHLPVQQQQPQQKTPLPAPPPPPAAPAQTLVPAPAHLV
100 110 120 130 140 150
440 450 460 470 480 490
pF1KB8 ATAGGGSTVIAHTATTHASVIQTVNHVLQGPGGKHIAHIAPSAPSPAVQLAPATPPIGHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ATAGGGSTVIAHTATTHASVIQTVNHVLQGPGGKHIAHIAPSAPSPAVQLAPATPPIGHI
160 170 180 190 200 210
500 510 520 530 540 550
pF1KB8 TVHPATLNHVAHLGSQLPLYPQPVAVSHIAHTLSHQQVNGTAGLGPPATVMAKPAVGAQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVHPATLNHVAHLGSQLPLYPQPVAVSHIAHTLSHQQVNGTAGLGPPATVMAKPAVGAQV
220 230 240 250 260 270
560 570 580
pF1KB8 VHHPQLVGQTVLNPVTMVTMPSFPVSTLKLA
:::::::::::::::::::::::::::::::
XP_016 VHHPQLVGQTVLNPVTMVTMPSFPVSTLKLA
280 290 300
>>XP_011522171 (OMIM: 603039) PREDICTED: max-binding pro (301 aa)
initn: 2045 init1: 2045 opt: 2045 Z-score: 776.4 bits: 152.7 E(85289): 1.7e-36
Smith-Waterman score: 2045; 100.0% identity (100.0% similar) in 301 aa overlap (282-582:1-301)
260 270 280 290 300 310
pF1KB8 DKKTSNLSVLRTALRYIQSLKRKEKEYEHEMERLAREKIATQQRLAELKHELSQWMDVLE
::::::::::::::::::::::::::::::
XP_011 MERLAREKIATQQRLAELKHELSQWMDVLE
10 20 30
320 330 340 350 360 370
pF1KB8 IDRVLRQTGQPEDDQASTSTASEGEDNIDEDMEEDRAGLGPPKLSHRPQPELLKSTLPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IDRVLRQTGQPEDDQASTSTASEGEDNIDEDMEEDRAGLGPPKLSHRPQPELLKSTLPPP
40 50 60 70 80 90
380 390 400 410 420 430
pF1KB8 STTPAPLPPHPHPHPHSVALPPAHLPVQQQQPQQKTPLPAPPPPPAAPAQTLVPAPAHLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 STTPAPLPPHPHPHPHSVALPPAHLPVQQQQPQQKTPLPAPPPPPAAPAQTLVPAPAHLV
100 110 120 130 140 150
440 450 460 470 480 490
pF1KB8 ATAGGGSTVIAHTATTHASVIQTVNHVLQGPGGKHIAHIAPSAPSPAVQLAPATPPIGHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ATAGGGSTVIAHTATTHASVIQTVNHVLQGPGGKHIAHIAPSAPSPAVQLAPATPPIGHI
160 170 180 190 200 210
500 510 520 530 540 550
pF1KB8 TVHPATLNHVAHLGSQLPLYPQPVAVSHIAHTLSHQQVNGTAGLGPPATVMAKPAVGAQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVHPATLNHVAHLGSQLPLYPQPVAVSHIAHTLSHQQVNGTAGLGPPATVMAKPAVGAQV
220 230 240 250 260 270
560 570 580
pF1KB8 VHHPQLVGQTVLNPVTMVTMPSFPVSTLKLA
:::::::::::::::::::::::::::::::
XP_011 VHHPQLVGQTVLNPVTMVTMPSFPVSTLKLA
280 290 300
582 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:28:35 2016 done: Fri Nov 4 12:28:36 2016
Total Scan time: 11.440 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]