FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8396, 464 aa
  1>>>pF1KB8396 464 - 464 aa - 464 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1897+/-0.000872; mu= 4.8984+/- 0.053
 mean_var=318.9080+/-64.101, 0's: 0 Z-trim(117.2): 10  B-trim: 0 in 0/52
 Lambda= 0.071819
 statistics sampled from 17939 (17948) to 17939 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.826), E-opt: 0.2 (0.551), width:  16
 Scan time:  4.200

The best scores are:                                      opt bits E(32554)
CCDS1687.1 MYCN gene_id:4613|Hs108|chr2            ( 464) 3143 338.7 7.6e-93


>>CCDS1687.1 MYCN gene_id:4613|Hs108|chr2                 (464 aa)
 initn: 3143 init1: 3143 opt: 3143  Z-score: 1780.3  bits: 338.7 E(32554): 7.6e-93
Smith-Waterman score: 3143; 100.0% identity (100.0% similar) in 464 aa overlap (1-464:1-464)

               10        20        30        40        50        60
pF1KB8 MPSCSTSTMPGMICKNPDLEFDSLQPCFYPDEDDFYFGGPDSTPPGEDIWKKFELLPTPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MPSCSTSTMPGMICKNPDLEFDSLQPCFYPDEDDFYFGGPDSTPPGEDIWKKFELLPTPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LSPSRGFAEHSSEPPSWVTEMLLENELWGSPAEEDAFGLGGLGGLTPNPVILQDCMWSGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 LSPSRGFAEHSSEPPSWVTEMLLENELWGSPAEEDAFGLGGLGGLTPNPVILQDCMWSGF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SAREKLERAVSEKLQHGRGPPTAGSTAQSPGAGAASPAGRGHGGAAGAGRAGAALPAELA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 SAREKLERAVSEKLQHGRGPPTAGSTAQSPGAGAASPAGRGHGGAAGAGRAGAALPAELA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 HPAAECVDPAVVFPFPVNKREPAPVPAAPASAPAAGPAVASGAGIAAPAGAPGVAPPRPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 HPAAECVDPAVVFPFPVNKREPAPVPAAPASAPAAGPAVASGAGIAAPAGAPGVAPPRPG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GRQTSGGDHKALSTSGEDTLSDSDDEDDEEEDEEEEIDVVTVEKRRSSSNTKAVTTFTIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 GRQTSGGDHKALSTSGEDTLSDSDDEDDEEEDEEEEIDVVTVEKRRSSSNTKAVTTFTIT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 VRPKNAALGPGRAQSSELILKRCLPIHQQHNYAAPSPYVESEDAPPQKKIKSEASPRPLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 VRPKNAALGPGRAQSSELILKRCLPIHQQHNYAAPSPYVESEDAPPQKKIKSEASPRPLK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 SVIPPKAKSLSPRNSDSEDSERRRNHNILERQRRNDLRSSFLTLRDHVPELVKNEKAAKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 SVIPPKAKSLSPRNSDSEDSERRRNHNILERQRRNDLRSSFLTLRDHVPELVKNEKAAKV
              370       380       390       400       410       420

              430       440       450       460    
pF1KB8 VILKKATEYVHSLQAEEHQLLLEKEKLQARQQQLLKKIEHARTC
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS16 VILKKATEYVHSLQAEEHQLLLEKEKLQARQQQLLKKIEHARTC
              430       440       450       460    




464 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:33:05 2016 done: Fri Nov  4 12:33:06 2016
 Total Scan time:  4.200 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]