FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8399, 227 aa
  1>>>pF1KB8399 227 - 227 aa - 227 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9259+/-0.000719; mu= 8.3632+/- 0.043
 mean_var=145.8495+/-30.746, 0's: 0 Z-trim(115.0): 50  B-trim: 710 in 1/53
 Lambda= 0.106199
 statistics sampled from 15494 (15544) to 15494 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.477), width:  16
 Scan time:  2.450

The best scores are:                                      opt bits E(32554)
CCDS10912.1 ZNRF1 gene_id:84937|Hs108|chr16        ( 227) 1611 257.3 5.7e-69
CCDS5426.1 ZNRF2 gene_id:223082|Hs108|chr7         ( 242)  609 103.8 9.8e-23


>>CCDS10912.1 ZNRF1 gene_id:84937|Hs108|chr16             (227 aa)
 initn: 1611 init1: 1611 opt: 1611  Z-score: 1351.7  bits: 257.3 E(32554): 5.7e-69
Smith-Waterman score: 1611; 100.0% identity (100.0% similar) in 227 aa overlap (1-227:1-227)

               10        20        30        40        50        60
pF1KB8 MGGKQSTAARSRGPFPGVSTDDSAVPPPGGAPHFGHYRTGGGAMGLRSRSVSSVAGMGMD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MGGKQSTAARSRGPFPGVSTDDSAVPPPGGAPHFGHYRTGGGAMGLRSRSVSSVAGMGMD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PSTAGGVPFGLYTPASRGTGDSERAPGGGGSASDSTYAHGNGYQETGGGHHRDGMLYLGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PSTAGGVPFGLYTPASRGTGDSERAPGGGGSASDSTYAHGNGYQETGGGHHRDGMLYLGS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RASLADALPLHIAPRWFSSHSGFKCPICSKSVASDEMEMHFIMCLSKPRLSYNDDVLTKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RASLADALPLHIAPRWFSSHSGFKCPICSKSVASDEMEMHFIMCLSKPRLSYNDDVLTKD
              130       140       150       160       170       180

              190       200       210       220       
pF1KB8 AGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCPEHPAD
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNRSCPEHPAD
              190       200       210       220       

>>CCDS5426.1 ZNRF2 gene_id:223082|Hs108|chr7              (242 aa)
 initn: 646 init1: 553 opt: 609  Z-score: 521.6  bits: 103.8 E(32554): 9.8e-23
Smith-Waterman score: 664; 45.6% identity (65.3% similar) in 248 aa overlap (1-227:1-242)

               10        20        30        40        50        60
pF1KB8 MGGKQSTAARSRGPFPGVSTDDSAVPPPGGAPHFGHYRTGGGAMGLRSRSVSSVAGMGMD
       ::.:::  : . :   . : .:      :::   :    :::: .  .    . .  . .
CCDS54 MGAKQSGPAAANGRTRAYSGSDLPSSSSGGAN--GTAGGGGGARAAAAGRFPAQVPSAHQ
               10        20        30          40        50        

                     70        80        90       100              
pF1KB8 PSTAGGV------PFGLYTPASRGTGDSERAPGGGGSASDSTYAHGN------GYQET--
       ::..::.      : .  .: ::. : .  . ..:. :..: ..  :      : :..  
CCDS54 PSASGGAAAAAAAPAAPAAPRSRSLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQDSVH
       60        70        80        90       100       110        

              110        120       130       140       150         
pF1KB8 ------GGGHHRD-GMLYLGSRASLADALPLHIAPRWFSSHSGFKCPICSKSVASDEMEM
             :::. :  :    : :  .. .:: :..:. :.   :::::.::: :.::::..
CCDS54 SSPEDGGGGRDRPVGGSPGGPRLVIG-SLPAHLSPHMFG---GFKCPVCSKFVSSDEMDL
      120       130       140        150          160       170    

     160       170       180       190       200       210         
pF1KB8 HFIMCLSKPRLSYNDDVLTKDAGECVICLEELLQGDTIARLPCLCIYHKSCIDSWFEVNR
       :..:::.:::..::.:::.::::::.:::::: ::::::::::::::::.::: ::::::
CCDS54 HLVMCLTKPRITYNEDVLSKDAGECAICLEELQQGDTIARLPCLCIYHKGCIDEWFEVNR
          180       190       200       210       220       230    

     220       
pF1KB8 SCPEHPAD
       ::::::.:
CCDS54 SCPEHPSD
          240  




227 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:35:53 2016 done: Fri Nov  4 12:35:54 2016
 Total Scan time:  2.450 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]