FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8400, 211 aa
  1>>>pF1KB8400 211 - 211 aa - 211 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3752+/-0.000947; mu= 8.9131+/- 0.057
 mean_var=89.8987+/-17.265, 0's: 0 Z-trim(106.5): 24  B-trim: 9 in 1/51
 Lambda= 0.135269
 statistics sampled from 8986 (8991) to 8986 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.276), width:  16
 Scan time:  2.130

The best scores are:                                      opt bits E(32554)
CCDS4961.1 BAG2 gene_id:9532|Hs108|chr6            ( 211) 1320 267.3 4.9e-72


>>CCDS4961.1 BAG2 gene_id:9532|Hs108|chr6                 (211 aa)
 initn: 1320 init1: 1320 opt: 1320  Z-score: 1406.8  bits: 267.3 E(32554): 4.9e-72
Smith-Waterman score: 1320; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)

               10        20        30        40        50        60
pF1KB8 MAQAKINAKANEGRFCRSSSMADRSSRLLESLDQLELRVEALREAATAVEQEKEILLEMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 MAQAKINAKANEGRFCRSSSMADRSSRLLESLDQLELRVEALREAATAVEQEKEILLEMI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HSIQNSQDMRQISDGEREELNLTANRLMGRTLTVEVSVETIRNPQQQESLKHATRIIDEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 HSIQNSQDMRQISDGEREELNLTANRLMGRTLTVEVSVETIRNPQQQESLKHATRIIDEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VNKFLDDLGNAKSHLMSLYSACSSEVPHGPVDQKFQSIVIGCALEDQKKIKRRLETLLRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 VNKFLDDLGNAKSHLMSLYSACSSEVPHGPVDQKFQSIVIGCALEDQKKIKRRLETLLRN
              130       140       150       160       170       180

              190       200       210 
pF1KB8 IENSDKAIKLLEHSKGAGSKTLQQNAESRFN
       :::::::::::::::::::::::::::::::
CCDS49 IENSDKAIKLLEHSKGAGSKTLQQNAESRFN
              190       200       210 




211 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:36:29 2016 done: Fri Nov  4 12:36:30 2016
 Total Scan time:  2.130 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]