Result of FASTA (ccds) for
pF1KB8407
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8407, 294 aa
1>>>pF1KB8407 294 - 294 aa - 294 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.9723+/-0.000769; mu= 7.5919+/- 0.046
mean_var=106.0075+/-22.813, 0's: 0 Z-trim(110.0): 45 B-trim: 0 in 0/54
Lambda= 0.124568
statistics sampled from 11249 (11269) to 11249 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.346), width: 16
Scan time: 2.060
The best scores are: opt bits E(32554)
CCDS4409.1 ZNF346 gene_id:23567|Hs108|chr5 ( 294) 1988 367.5 6.4e-102
CCDS78094.1 ZNF346 gene_id:23567|Hs108|chr5 ( 319) 1596 297.1 1.1e-80
CCDS83052.1 ZNF346 gene_id:23567|Hs108|chr5 ( 262) 1161 218.9 3.2e-57
CCDS83053.1 ZNF346 gene_id:23567|Hs108|chr5 ( 196) 840 161.2 5.7e-40
CCDS83054.1 ZNF346 gene_id:23567|Hs108|chr5 ( 118) 404 82.7 1.4e-16
CCDS47848.1 ZMAT4 gene_id:79698|Hs108|chr8 ( 153) 380 78.4 3.6e-15
CCDS34885.1 ZMAT4 gene_id:79698|Hs108|chr8 ( 229) 340 71.3 7.4e-13
CCDS35348.1 ZMAT1 gene_id:84460|Hs108|chrX ( 638) 339 71.3 2e-12
>>CCDS4409.1 ZNF346 gene_id:23567|Hs108|chr5 (294 aa)
initn: 1988 init1: 1988 opt: 1988 Z-score: 1943.3 bits: 367.5 E(32554): 6.4e-102
Smith-Waterman score: 1988; 99.7% identity (100.0% similar) in 294 aa overlap (1-294:1-294)
10 20 30 40 50 60
pF1KB8 MEYPAPATVQAADGGAAGPYSSSELLEGQEPDGVRFDRERARRLWEAVSGAQPVGREEVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MEYPAPATVQAADGGAAGPYSSSELLEGQEPDGVRFDRERARRLWEAVSGAQPVGREEVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HMIQKNQCLFTNTQCKVCCALLISESQKLAHYQSKKHANKVKRYLAIHGMETLKGETKKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HMIQKNQCLFTNTQCKVCCALLISESQKLAHYQSKKHANKVKRYLAIHGMETLKGETKKL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 DSDQKSSRSKDKNQCCPICNMTFSSPVVAQSYYLGKTHAKNLKLKQQSTKVEALHQNREM
:::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS44 DSDQKSSRSKDKNQCCPICNMTFSSPVVAQSHYLGKTHAKNLKLKQQSTKVEALHQNREM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 IDPDKFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 IDPDKFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGYP
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 CKTCKIVLNSIEQYQAHVSGFKHKNQSPKTVASSLGQIPMQRQPIQKDSTTLED
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 CKTCKIVLNSIEQYQAHVSGFKHKNQSPKTVASSLGQIPMQRQPIQKDSTTLED
250 260 270 280 290
>>CCDS78094.1 ZNF346 gene_id:23567|Hs108|chr5 (319 aa)
initn: 1976 init1: 1596 opt: 1596 Z-score: 1562.0 bits: 297.1 E(32554): 1.1e-80
Smith-Waterman score: 1928; 91.8% identity (92.2% similar) in 319 aa overlap (1-294:1-319)
10 20 30 40 50
pF1KB8 MEYPAPATVQAADGGAAGPYSSSELLEGQEPDGVRFDRERARRLWEAVSGAQPVGREE--
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MEYPAPATVQAADGGAAGPYSSSELLEGQEPDGVRFDRERARRLWEAVSGAQPVGREEAQ
10 20 30 40 50 60
60 70 80 90
pF1KB8 -----------------------VEHMIQKNQCLFTNTQCKVCCALLISESQKLAHYQSK
:::::::::::::::::::::::::::::::::::::
CCDS78 FFPHSRTVIPILVLSETYSLCHPVEHMIQKNQCLFTNTQCKVCCALLISESQKLAHYQSK
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB8 KHANKVKRYLAIHGMETLKGETKKLDSDQKSSRSKDKNQCCPICNMTFSSPVVAQSYYLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS78 KHANKVKRYLAIHGMETLKGETKKLDSDQKSSRSKDKNQCCPICNMTFSSPVVAQSHYLG
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB8 KTHAKNLKLKQQSTKVEALHQNREMIDPDKFCSLCHATFNDPVMAQQHYVGKKHRKQETK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 KTHAKNLKLKQQSTKVEALHQNREMIDPDKFCSLCHATFNDPVMAQQHYVGKKHRKQETK
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB8 LKLMARYGRLADPAVTDFPAGKGYPCKTCKIVLNSIEQYQAHVSGFKHKNQSPKTVASSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 LKLMARYGRLADPAVTDFPAGKGYPCKTCKIVLNSIEQYQAHVSGFKHKNQSPKTVASSL
250 260 270 280 290 300
280 290
pF1KB8 GQIPMQRQPIQKDSTTLED
:::::::::::::::::::
CCDS78 GQIPMQRQPIQKDSTTLED
310
>>CCDS83052.1 ZNF346 gene_id:23567|Hs108|chr5 (262 aa)
initn: 1151 init1: 1151 opt: 1161 Z-score: 1140.8 bits: 218.9 E(32554): 3.2e-57
Smith-Waterman score: 1711; 88.8% identity (89.1% similar) in 294 aa overlap (1-294:1-262)
10 20 30 40 50 60
pF1KB8 MEYPAPATVQAADGGAAGPYSSSELLEGQEPDGVRFDRERARRLWEAVSGAQPVGREEVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MEYPAPATVQAADGGAAGPYSSSELLEGQEPDGVRFDRERARRLWEAVSGAQPVGREEVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 HMIQKNQCLFTNTQCKVCCALLISESQKLAHYQSKKHANKVKRYLAIHGMETLKGETKKL
::::::::::::::::::::::::::::::::::
CCDS83 HMIQKNQCLFTNTQCKVCCALLISESQKLAHYQS--------------------------
70 80 90
130 140 150 160 170 180
pF1KB8 DSDQKSSRSKDKNQCCPICNMTFSSPVVAQSYYLGKTHAKNLKLKQQSTKVEALHQNREM
:::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS83 ------SRSKDKNQCCPICNMTFSSPVVAQSHYLGKTHAKNLKLKQQSTKVEALHQNREM
100 110 120 130 140
190 200 210 220 230 240
pF1KB8 IDPDKFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 IDPDKFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGYP
150 160 170 180 190 200
250 260 270 280 290
pF1KB8 CKTCKIVLNSIEQYQAHVSGFKHKNQSPKTVASSLGQIPMQRQPIQKDSTTLED
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 CKTCKIVLNSIEQYQAHVSGFKHKNQSPKTVASSLGQIPMQRQPIQKDSTTLED
210 220 230 240 250 260
>>CCDS83053.1 ZNF346 gene_id:23567|Hs108|chr5 (196 aa)
initn: 1219 init1: 840 opt: 840 Z-score: 831.0 bits: 161.2 E(32554): 5.7e-40
Smith-Waterman score: 1036; 63.3% identity (65.3% similar) in 294 aa overlap (1-294:1-196)
10 20 30 40 50 60
pF1KB8 MEYPAPATVQAADGGAAGPYSSSELLEGQEPDGVRFDRERARRLWEAVSGAQPVGREEVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MEYPAPATVQAADGGAAGPYSSSELLEGQEPDGVRFDRERARRLWEAVSGAQPVGREE--
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 HMIQKNQCLFTNTQCKVCCALLISESQKLAHYQSKKHANKVKRYLAIHGMETLKGETKKL
:: .:.:
CCDS83 -------------------AL-----------------------------------SKRL
60
130 140 150 160 170 180
pF1KB8 DSDQKSSRSKDKNQCCPICNMTFSSPVVAQSYYLGKTHAKNLKLKQQSTKVEALHQNREM
..: .. : ::::::::
CCDS83 -----------------------TNPFLVASTL-------------------ALHQNREM
70 80
190 200 210 220 230 240
pF1KB8 IDPDKFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 IDPDKFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGYP
90 100 110 120 130 140
250 260 270 280 290
pF1KB8 CKTCKIVLNSIEQYQAHVSGFKHKNQSPKTVASSLGQIPMQRQPIQKDSTTLED
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 CKTCKIVLNSIEQYQAHVSGFKHKNQSPKTVASSLGQIPMQRQPIQKDSTTLED
150 160 170 180 190
>>CCDS83054.1 ZNF346 gene_id:23567|Hs108|chr5 (118 aa)
initn: 782 init1: 404 opt: 404 Z-score: 411.0 bits: 82.7 E(32554): 1.4e-16
Smith-Waterman score: 434; 40.1% identity (40.1% similar) in 294 aa overlap (1-294:1-118)
10 20 30 40 50 60
pF1KB8 MEYPAPATVQAADGGAAGPYSSSELLEGQEPDGVRFDRERARRLWEAVSGAQPVGREEVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MEYPAPATVQAADGGAAGPYSSSELLEGQEPDGVRFDRERARRLWEAVSGAQPVGREE--
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 HMIQKNQCLFTNTQCKVCCALLISESQKLAHYQSKKHANKVKRYLAIHGMETLKGETKKL
CCDS83 ------------------------------------------------------------
130 140 150 160 170 180
pF1KB8 DSDQKSSRSKDKNQCCPICNMTFSSPVVAQSYYLGKTHAKNLKLKQQSTKVEALHQNREM
CCDS83 ------------------------------------------------------------
190 200 210 220 230 240
pF1KB8 IDPDKFCSLCHATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGYP
::::::
CCDS83 ------------------------------------------------------AGKGYP
60
250 260 270 280 290
pF1KB8 CKTCKIVLNSIEQYQAHVSGFKHKNQSPKTVASSLGQIPMQRQPIQKDSTTLED
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 CKTCKIVLNSIEQYQAHVSGFKHKNQSPKTVASSLGQIPMQRQPIQKDSTTLED
70 80 90 100 110
>>CCDS47848.1 ZMAT4 gene_id:79698|Hs108|chr8 (153 aa)
initn: 400 init1: 331 opt: 380 Z-score: 385.9 bits: 78.4 E(32554): 3.6e-15
Smith-Waterman score: 380; 42.3% identity (68.6% similar) in 156 aa overlap (66-217:7-151)
40 50 60 70 80 90
pF1KB8 FDRERARRLWEAVSGAQPVGREEVEHMIQKNQCLFTNTQCKVCCALLISESQKLAHYQSK
.: :::.. :::: : ::::::..:::.:.
CCDS47 MKSSDIDQDLFTDSYCKVCSAQLISESQRVAHYESR
10 20 30
100 110 120 130 140 150
pF1KB8 KHANKVKRYLAIHGMETLKGETKKLDSDQKSSRSK-DKNQCCPICNMTFSSPVVAQSYYL
:::.::. : .: . .:.: :.. :. . :::.:: .:::.:.: :::.:.:
CCDS47 KHASKVRLYYMLHPRDG-GCPAKRLRSENGSDADMVDKNKCCTLCNMSFTSAVVADSHYQ
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB8 GKTHAKNLKL---KQQSTKVEALHQNREMIDPDKFCSLCHATFNDPVMAQQHYVGKKHRK
:: ::: ::: .. :. .:..: . :..: ...:. . . : :.::
CCDS47 GKIHAKRLKLLLGEKTPLKTTGLRRNYR-------CTICSVSLNSIEQYHAHLKGSKH--
100 110 120 130 140
220 230 240 250 260 270
pF1KB8 QETKLKLMARYGRLADPAVTDFPAGKGYPCKTCKIVLNSIEQYQAHVSGFKHKNQSPKTV
.:.::
CCDS47 -QTNLKNK
150
>>CCDS34885.1 ZMAT4 gene_id:79698|Hs108|chr8 (229 aa)
initn: 532 init1: 331 opt: 340 Z-score: 344.3 bits: 71.3 E(32554): 7.4e-13
Smith-Waterman score: 565; 43.4% identity (65.3% similar) in 219 aa overlap (66-264:7-223)
40 50 60 70 80 90
pF1KB8 FDRERARRLWEAVSGAQPVGREEVEHMIQKNQCLFTNTQCKVCCALLISESQKLAHYQSK
.: :::.. :::: : ::::::..:::.:.
CCDS34 MKSSDIDQDLFTDSYCKVCSAQLISESQRVAHYESR
10 20 30
100 110 120 130 140 150
pF1KB8 KHANKVKRYLAIHGMETLKGETKKLDSDQKSSRSK-DKNQCCPICNMTFSSPVVAQSYYL
:::.::. : .: . .:.: :.. :. . :::.:: .:::.:.: :::.:.:
CCDS34 KHASKVRLYYMLHPRDG-GCPAKRLRSENGSDADMVDKNKCCTLCNMSFTSAVVADSHYQ
40 50 60 70 80 90
160 170 180 190
pF1KB8 GKTHAKNLKL--------KQQSTKVEALHQNR-----------EMIDPDKFCSLCHATFN
:: ::: ::: : .: . :. : . : :..:.:: : ::
CCDS34 GKIHAKRLKLLLGEKTPLKTTATPLSPLKPPRMDTAPVVASPYQRRDSDRYCGLCAAWFN
100 110 120 130 140 150
200 210 220 230 240 250
pF1KB8 DPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAVTDFPAGKGYPCKTCKIVLNSIEQYQ
.:.:::::: ::::.:. ... :. . : : . ..: : :.. :::::::.
CCDS34 NPLMAQQHYDGKKHKKNAARVALLEQLGTTLDMGELR-GLRRNYRCTICSVSLNSIEQYH
160 170 180 190 200 210
260 270 280 290
pF1KB8 AHVSGFKHKNQSPKTVASSLGQIPMQRQPIQKDSTTLED
::..: ::.
CCDS34 AHLKGSKHQTNLKNK
220
>>CCDS35348.1 ZMAT1 gene_id:84460|Hs108|chrX (638 aa)
initn: 418 init1: 168 opt: 339 Z-score: 336.4 bits: 71.3 E(32554): 2e-12
Smith-Waterman score: 345; 30.0% identity (64.5% similar) in 220 aa overlap (49-252:32-251)
20 30 40 50 60 70
pF1KB8 PYSSSELLEGQEPDGVRFDRERARRLWEAVSGAQPVGREEVEHMIQKNQCLFTNTQCKVC
:..: .: .. :.. :::. :.::
CCDS35 ESCSVTRLECSGAISAHCSLHLPGSSDSPASASQIAGTTDAIWNEQEKAELFTDKFCQVC
10 20 30 40 50 60
80 90 100 110 120 130
pF1KB8 CALLISESQKLAHYQSKKHANKVKRYLAIHGMET-LKGETKKLDSDQ-KSSRSK--DKNQ
..: :::...::...:::..:. :. .:: .. . :. :. .. . : . :::.
CCDS35 GVMLQFESQRISHYEGEKHAQNVSFYFQMHGEQNEVPGKKMKMHVENFQVHRYEGVDKNK
70 80 90 100 110 120
140 150 160 170 180 190
pF1KB8 CCPICNMTFSSPVVAQSYYLGKTHAKNLK--LKQQSTKVEALHQNREMIDPDKF-CSLCH
: .::: ::::..:::.:.::.:::.:: ..... . : . .. . : .:
CCDS35 FCDLCNMMFSSPLIAQSHYVGKVHAKKLKQLMEEHDQASPSGFQPEMAFSMRTYVCHICS
130 140 150 160 170 180
200 210 220 230 240
pF1KB8 ATFNDPVMAQQHYVGKKHRKQETKLKLMARYGRLADPAV----TDF---PAGKGYPCKTC
.:.. : ..:. :..:. .:. . ... .: .. . .:. ..: :::
CCDS35 IAFTSLDMFRSHMQGSEHQIKESIVINLVKNSRKTQDSYQNECADYINVQKARGLEAKTC
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 --KIVLNSIEQYQAHVSGFKHKNQSPKTVASSLGQIPMQRQPIQKDSTTLED
:. .:.:
CCDS35 FRKMEESSLETRRYREVVDSRPRHRMFEQRLPFETFRTYAAPYNISQAMEKQLPHSKKTY
250 260 270 280 290 300
294 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:40:44 2016 done: Fri Nov 4 12:40:44 2016
Total Scan time: 2.060 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]