FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8410, 316 aa
  1>>>pF1KB8410 316 - 316 aa - 316 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4436+/-0.000867; mu= 10.3973+/- 0.052
 mean_var=78.4046+/-15.574, 0's: 0 Z-trim(107.6): 17  B-trim: 0 in 0/53
 Lambda= 0.144845
 statistics sampled from 9661 (9675) to 9661 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.297), width:  16
 Scan time:  2.620

The best scores are:                                      opt bits E(32554)
CCDS56611.1 BRCC3 gene_id:79184|Hs108|chrX         ( 316) 2082 444.3 5.7e-125
CCDS56612.1 BRCC3 gene_id:79184|Hs108|chrX         ( 291) 1197 259.4 2.5e-69
CCDS56610.1 BRCC3 gene_id:79184|Hs108|chrX         ( 292) 1185 256.9 1.4e-68


>>CCDS56611.1 BRCC3 gene_id:79184|Hs108|chrX              (316 aa)
 initn: 2082 init1: 2082 opt: 2082  Z-score: 2357.1  bits: 444.3 E(32554): 5.7e-125
Smith-Waterman score: 2082; 100.0% identity (100.0% similar) in 316 aa overlap (1-316:1-316)

               10        20        30        40        50        60
pF1KB8 MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 YHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SSESLHGPRDFWSSSQHISIEGQKEEERYERIEIPIHIVPHVTIGKVCLESAVELPKILC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 SSESLHGPRDFWSSSQHISIEGQKEEERYERIEIPIHIVPHVTIGKVCLESAVELPKILC
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 QEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 QEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQE
              250       260       270       280       290       300

              310      
pF1KB8 LQQEKEELMQELSSLE
       ::::::::::::::::
CCDS56 LQQEKEELMQELSSLE
              310      

>>CCDS56612.1 BRCC3 gene_id:79184|Hs108|chrX              (291 aa)
 initn: 1227 init1: 1197 opt: 1197  Z-score: 1358.3  bits: 259.4 E(32554): 2.5e-69
Smith-Waterman score: 1847; 92.1% identity (92.1% similar) in 316 aa overlap (1-316:1-291)

               10        20        30        40        50        60
pF1KB8 MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTRSDSKFAYTGTEMR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 TVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVGW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 YHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 SSESLHGPRDFWSSSQHISIEGQKEEERYERIEIPIHIVPHVTIGKVCLESAVELPKILC
       :::                         ::::::::::::::::::::::::::::::::
CCDS56 SSE-------------------------YERIEIPIHIVPHVTIGKVCLESAVELPKILC
                                       190       200       210     

              250       260       270       280       290       300
pF1KB8 QEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 QEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQE
         220       230       240       250       260       270     

              310      
pF1KB8 LQQEKEELMQELSSLE
       ::::::::::::::::
CCDS56 LQQEKEELMQELSSLE
         280       290 

>>CCDS56610.1 BRCC3 gene_id:79184|Hs108|chrX              (292 aa)
 initn: 991 init1: 914 opt: 1185  Z-score: 1344.7  bits: 256.9 E(32554): 1.4e-68
Smith-Waterman score: 1835; 91.8% identity (91.8% similar) in 317 aa overlap (1-316:1-292)

               10        20        30        40         50         
pF1KB8 MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDT-RSDSKFAYTGTEM
       :::::::::::::::::::::::::::::::::::::::::::::: :::::::::::::
CCDS56 MAVQVVQAVQAVHLESDAFLVCLNHALSTEKEEVMGLCIGELNDDTSRSDSKFAYTGTEM
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB8 RTVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 RTVAEKVDAVRIVHIHSVIILRRSDKRKDRVEISPEQLSAASTEAERLAELTGRPMRVVG
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB8 WYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 WYHSHPHITVWPSHVDVRTQAMYQMMDQGFVGLIFSCFIEDKNTKTGRVLYTCFQSIQAQ
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KB8 KSSESLHGPRDFWSSSQHISIEGQKEEERYERIEIPIHIVPHVTIGKVCLESAVELPKIL
       ::::                         :::::::::::::::::::::::::::::::
CCDS56 KSSE-------------------------YERIEIPIHIVPHVTIGKVCLESAVELPKIL
                                       190       200       210     

     240       250       260       270       280       290         
pF1KB8 CQEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 CQEEQDAYRRIHSLTHLDSVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNQQHLQ
         220       230       240       250       260       270     

     300       310      
pF1KB8 ELQQEKEELMQELSSLE
       :::::::::::::::::
CCDS56 ELQQEKEELMQELSSLE
         280       290  




316 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:42:21 2016 done: Fri Nov  4 12:42:22 2016
 Total Scan time:  2.620 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]