Result of FASTA (omim) for
pF1KB8411
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8411, 866 aa
1>>>pF1KB8411 866 - 866 aa - 866 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.1244+/-0.000367; mu= 5.9056+/- 0.023
mean_var=264.2513+/-53.004, 0's: 0 Z-trim(121.8): 42 B-trim: 0 in 0/59
Lambda= 0.078898
statistics sampled from 39007 (39055) to 39007 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.771), E-opt: 0.2 (0.458), width: 16
Scan time: 15.440
The best scores are: opt bits E(85289)
XP_016867852 (OMIM: 212840,609948) PREDICTED: E3 u ( 866) 6077 705.5 2.7e-202
NP_996999 (OMIM: 212840,609948) E3 ubiquitin-prote ( 866) 6077 705.5 2.7e-202
NP_996994 (OMIM: 212840,609948) E3 ubiquitin-prote ( 923) 5614 652.8 2.1e-186
XP_005249842 (OMIM: 212840,609948) PREDICTED: E3 u ( 923) 5614 652.8 2.1e-186
XP_016867853 (OMIM: 212840,609948) PREDICTED: E3 u ( 720) 4094 479.7 2.1e-134
XP_011513738 (OMIM: 212840,609948) PREDICTED: E3 u ( 488) 3493 411.1 6.2e-114
XP_016867854 (OMIM: 212840,609948) PREDICTED: E3 u ( 488) 3493 411.1 6.2e-114
NP_006453 (OMIM: 610924,615895) ranBP-type and C3H ( 468) 286 46.1 0.00046
NP_112506 (OMIM: 610924,615895) ranBP-type and C3H ( 510) 286 46.1 0.00049
XP_005260702 (OMIM: 610924,615895) PREDICTED: ranB ( 527) 286 46.1 0.0005
XP_011527440 (OMIM: 610924,615895) PREDICTED: ranB ( 551) 286 46.2 0.00052
XP_011527439 (OMIM: 610924,615895) PREDICTED: ranB ( 568) 286 46.2 0.00053
XP_016861030 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 409) 248 41.7 0.0084
XP_016861029 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 409) 248 41.7 0.0084
XP_016861026 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 421) 248 41.7 0.0086
XP_011531577 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 421) 248 41.7 0.0086
XP_016861027 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 421) 248 41.7 0.0086
XP_016861025 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 421) 248 41.7 0.0086
XP_016861028 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 421) 248 41.7 0.0086
XP_016861020 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 493) 248 41.8 0.0096
NP_001304262 (OMIM: 605615) E3 ubiquitin-protein l ( 493) 248 41.8 0.0096
NP_006312 (OMIM: 605615) E3 ubiquitin-protein liga ( 493) 248 41.8 0.0096
XP_016861021 (OMIM: 605615) PREDICTED: E3 ubiquiti ( 493) 248 41.8 0.0096
>>XP_016867852 (OMIM: 212840,609948) PREDICTED: E3 ubiqu (866 aa)
initn: 6077 init1: 6077 opt: 6077 Z-score: 3752.8 bits: 705.5 E(85289): 2.7e-202
Smith-Waterman score: 6077; 100.0% identity (100.0% similar) in 866 aa overlap (1-866:1-866)
10 20 30 40 50 60
pF1KB8 MEEGNNNEEVIHLNNFHCHRGQEWINLRDGPITISDSSDEERIPMLVTPAPQQHEEEDLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEEGNNNEEVIHLNNFHCHRGQEWINLRDGPITISDSSDEERIPMLVTPAPQQHEEEDLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DDVILTEDDSEDDYGEFLDLGPPGISEFTKPSGQTEREPKPGPSHNQAANDIVNPRSEQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DDVILTEDDSEDDYGEFLDLGPPGISEFTKPSGQTEREPKPGPSHNQAANDIVNPRSEQK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VIILEEGSLLYTESDPLETQNQSSEDSETELLSNLGESAALADDQAIEEDCWLDHPYFQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VIILEEGSLLYTESDPLETQNQSSEDSETELLSNLGESAALADDQAIEEDCWLDHPYFQS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 LNQQPREITNQVVPQERQPEAELGRLLFQHEFPGPAFPRPEPQQGGISGPSSPQPAHPLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LNQQPREITNQVVPQERQPEAELGRLLFQHEFPGPAFPRPEPQQGGISGPSSPQPAHPLG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 EFEDQQLASDDEEPGPAFPMQESQEPNLENIWGQEAAEVDQELVELLVKETEARFPDVAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EFEDQQLASDDEEPGPAFPMQESQEPNLENIWGQEAAEVDQELVELLVKETEARFPDVAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 GFIEEIIHFKNYYDLNVLCNFLLENPDYPKREDRIIINPSSSLLASQDETKLPKIDFFDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GFIEEIIHFKNYYDLNVLCNFLLENPDYPKREDRIIINPSSSLLASQDETKLPKIDFFDY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 SKLTPLDQRCFIQAADLLMADFKVLSSQDIKWALHELKGHYAITRKALSDAIKKWQELSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SKLTPLDQRCFIQAADLLMADFKVLSSQDIKWALHELKGHYAITRKALSDAIKKWQELSP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 ETSGKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDRRALLPAVQQEQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ETSGKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDRRALLPAVQQEQE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 FYEQKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELTQCADAHLFCKEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FYEQKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELTQCADAHLFCKEC
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 LIRYAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVAAAYAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIRYAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVAAAYAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 ELVRCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAEKDDIKYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELVRCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAEKDDIKYR
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB8 TSIEEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSINGYDHFCQHPRSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSIEEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSINGYDHFCQHPRSP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB8 GAPCQECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKRIGPPLEKPVEKVQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GAPCQECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKRIGPPLEKPVEKVQR
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB8 VEALPRPVPQNLPQPQMPPYAFAHPPFPLPPVRPVFNNFPLNMGPIPAPYVPPLPNVRVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VEALPRPVPQNLPQPQMPPYAFAHPPFPLPPVRPVFNNFPLNMGPIPAPYVPPLPNVRVN
790 800 810 820 830 840
850 860
pF1KB8 YDFGPIHMPLEHNLPMHFGPQPRHRF
::::::::::::::::::::::::::
XP_016 YDFGPIHMPLEHNLPMHFGPQPRHRF
850 860
>>NP_996999 (OMIM: 212840,609948) E3 ubiquitin-protein l (866 aa)
initn: 6077 init1: 6077 opt: 6077 Z-score: 3752.8 bits: 705.5 E(85289): 2.7e-202
Smith-Waterman score: 6077; 100.0% identity (100.0% similar) in 866 aa overlap (1-866:1-866)
10 20 30 40 50 60
pF1KB8 MEEGNNNEEVIHLNNFHCHRGQEWINLRDGPITISDSSDEERIPMLVTPAPQQHEEEDLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 MEEGNNNEEVIHLNNFHCHRGQEWINLRDGPITISDSSDEERIPMLVTPAPQQHEEEDLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DDVILTEDDSEDDYGEFLDLGPPGISEFTKPSGQTEREPKPGPSHNQAANDIVNPRSEQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 DDVILTEDDSEDDYGEFLDLGPPGISEFTKPSGQTEREPKPGPSHNQAANDIVNPRSEQK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 VIILEEGSLLYTESDPLETQNQSSEDSETELLSNLGESAALADDQAIEEDCWLDHPYFQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 VIILEEGSLLYTESDPLETQNQSSEDSETELLSNLGESAALADDQAIEEDCWLDHPYFQS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 LNQQPREITNQVVPQERQPEAELGRLLFQHEFPGPAFPRPEPQQGGISGPSSPQPAHPLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 LNQQPREITNQVVPQERQPEAELGRLLFQHEFPGPAFPRPEPQQGGISGPSSPQPAHPLG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 EFEDQQLASDDEEPGPAFPMQESQEPNLENIWGQEAAEVDQELVELLVKETEARFPDVAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 EFEDQQLASDDEEPGPAFPMQESQEPNLENIWGQEAAEVDQELVELLVKETEARFPDVAN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 GFIEEIIHFKNYYDLNVLCNFLLENPDYPKREDRIIINPSSSLLASQDETKLPKIDFFDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 GFIEEIIHFKNYYDLNVLCNFLLENPDYPKREDRIIINPSSSLLASQDETKLPKIDFFDY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 SKLTPLDQRCFIQAADLLMADFKVLSSQDIKWALHELKGHYAITRKALSDAIKKWQELSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 SKLTPLDQRCFIQAADLLMADFKVLSSQDIKWALHELKGHYAITRKALSDAIKKWQELSP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 ETSGKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDRRALLPAVQQEQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 ETSGKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDRRALLPAVQQEQE
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 FYEQKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELTQCADAHLFCKEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 FYEQKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELTQCADAHLFCKEC
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 LIRYAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVAAAYAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 LIRYAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVAAAYAD
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 ELVRCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAEKDDIKYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 ELVRCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAEKDDIKYR
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB8 TSIEEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSINGYDHFCQHPRSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 TSIEEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSINGYDHFCQHPRSP
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB8 GAPCQECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKRIGPPLEKPVEKVQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 GAPCQECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKRIGPPLEKPVEKVQR
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB8 VEALPRPVPQNLPQPQMPPYAFAHPPFPLPPVRPVFNNFPLNMGPIPAPYVPPLPNVRVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 VEALPRPVPQNLPQPQMPPYAFAHPPFPLPPVRPVFNNFPLNMGPIPAPYVPPLPNVRVN
790 800 810 820 830 840
850 860
pF1KB8 YDFGPIHMPLEHNLPMHFGPQPRHRF
::::::::::::::::::::::::::
NP_996 YDFGPIHMPLEHNLPMHFGPQPRHRF
850 860
>>NP_996994 (OMIM: 212840,609948) E3 ubiquitin-protein l (923 aa)
initn: 5614 init1: 5614 opt: 5614 Z-score: 3467.7 bits: 652.8 E(85289): 2.1e-186
Smith-Waterman score: 5765; 93.7% identity (93.7% similar) in 898 aa overlap (26-866:26-923)
10 20 30 40 50 60
pF1KB8 MEEGNNNEEVIHLNNFHCHRGQEWINLRDGPITISDSSDEERIPMLVTPAPQQHEEEDLD
:::::::::::::::::::::::::::::::::::
NP_996 MEEGNNNEEVIHLNNFHCHRGQEWINLRDGPITISDSSDEERIPMLVTPAPQQHEEEDLD
10 20 30 40 50 60
pF1KB8 DDVILTE-----------------------------------------------------
:::::::
NP_996 DDVILTETNKPQRSRPNLIKPAAQWQDLKRLGEERPKKSRAAFESDKSSYFSVCNNPLFD
70 80 90 100 110 120
70 80 90 100 110 120
pF1KB8 ----DDSEDDYGEFLDLGPPGISEFTKPSGQTEREPKPGPSHNQAANDIVNPRSEQKVII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 SGAQDDSEDDYGEFLDLGPPGISEFTKPSGQTEREPKPGPSHNQAANDIVNPRSEQKVII
130 140 150 160 170 180
130 140 150 160 170 180
pF1KB8 LEEGSLLYTESDPLETQNQSSEDSETELLSNLGESAALADDQAIEEDCWLDHPYFQSLNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 LEEGSLLYTESDPLETQNQSSEDSETELLSNLGESAALADDQAIEEDCWLDHPYFQSLNQ
190 200 210 220 230 240
190 200 210 220 230 240
pF1KB8 QPREITNQVVPQERQPEAELGRLLFQHEFPGPAFPRPEPQQGGISGPSSPQPAHPLGEFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 QPREITNQVVPQERQPEAELGRLLFQHEFPGPAFPRPEPQQGGISGPSSPQPAHPLGEFE
250 260 270 280 290 300
250 260 270 280 290 300
pF1KB8 DQQLASDDEEPGPAFPMQESQEPNLENIWGQEAAEVDQELVELLVKETEARFPDVANGFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 DQQLASDDEEPGPAFPMQESQEPNLENIWGQEAAEVDQELVELLVKETEARFPDVANGFI
310 320 330 340 350 360
310 320 330 340 350 360
pF1KB8 EEIIHFKNYYDLNVLCNFLLENPDYPKREDRIIINPSSSLLASQDETKLPKIDFFDYSKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 EEIIHFKNYYDLNVLCNFLLENPDYPKREDRIIINPSSSLLASQDETKLPKIDFFDYSKL
370 380 390 400 410 420
370 380 390 400 410 420
pF1KB8 TPLDQRCFIQAADLLMADFKVLSSQDIKWALHELKGHYAITRKALSDAIKKWQELSPETS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 TPLDQRCFIQAADLLMADFKVLSSQDIKWALHELKGHYAITRKALSDAIKKWQELSPETS
430 440 450 460 470 480
430 440 450 460 470 480
pF1KB8 GKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDRRALLPAVQQEQEFYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 GKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDRRALLPAVQQEQEFYE
490 500 510 520 530 540
490 500 510 520 530 540
pF1KB8 QKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELTQCADAHLFCKECLIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 QKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELTQCADAHLFCKECLIR
550 560 570 580 590 600
550 560 570 580 590 600
pF1KB8 YAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVAAAYADELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 YAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVAAAYADELV
610 620 630 640 650 660
610 620 630 640 650 660
pF1KB8 RCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAEKDDIKYRTSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 RCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAEKDDIKYRTSI
670 680 690 700 710 720
670 680 690 700 710 720
pF1KB8 EEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSINGYDHFCQHPRSPGAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 EEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSINGYDHFCQHPRSPGAP
730 740 750 760 770 780
730 740 750 760 770 780
pF1KB8 CQECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKRIGPPLEKPVEKVQRVEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 CQECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKRIGPPLEKPVEKVQRVEA
790 800 810 820 830 840
790 800 810 820 830 840
pF1KB8 LPRPVPQNLPQPQMPPYAFAHPPFPLPPVRPVFNNFPLNMGPIPAPYVPPLPNVRVNYDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_996 LPRPVPQNLPQPQMPPYAFAHPPFPLPPVRPVFNNFPLNMGPIPAPYVPPLPNVRVNYDF
850 860 870 880 890 900
850 860
pF1KB8 GPIHMPLEHNLPMHFGPQPRHRF
:::::::::::::::::::::::
NP_996 GPIHMPLEHNLPMHFGPQPRHRF
910 920
>>XP_005249842 (OMIM: 212840,609948) PREDICTED: E3 ubiqu (923 aa)
initn: 5614 init1: 5614 opt: 5614 Z-score: 3467.7 bits: 652.8 E(85289): 2.1e-186
Smith-Waterman score: 5765; 93.7% identity (93.7% similar) in 898 aa overlap (26-866:26-923)
10 20 30 40 50 60
pF1KB8 MEEGNNNEEVIHLNNFHCHRGQEWINLRDGPITISDSSDEERIPMLVTPAPQQHEEEDLD
:::::::::::::::::::::::::::::::::::
XP_005 MEEGNNNEEVIHLNNFHCHRGQEWINLRDGPITISDSSDEERIPMLVTPAPQQHEEEDLD
10 20 30 40 50 60
pF1KB8 DDVILTE-----------------------------------------------------
:::::::
XP_005 DDVILTETNKPQRSRPNLIKPAAQWQDLKRLGEERPKKSRAAFESDKSSYFSVCNNPLFD
70 80 90 100 110 120
70 80 90 100 110 120
pF1KB8 ----DDSEDDYGEFLDLGPPGISEFTKPSGQTEREPKPGPSHNQAANDIVNPRSEQKVII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SGAQDDSEDDYGEFLDLGPPGISEFTKPSGQTEREPKPGPSHNQAANDIVNPRSEQKVII
130 140 150 160 170 180
130 140 150 160 170 180
pF1KB8 LEEGSLLYTESDPLETQNQSSEDSETELLSNLGESAALADDQAIEEDCWLDHPYFQSLNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LEEGSLLYTESDPLETQNQSSEDSETELLSNLGESAALADDQAIEEDCWLDHPYFQSLNQ
190 200 210 220 230 240
190 200 210 220 230 240
pF1KB8 QPREITNQVVPQERQPEAELGRLLFQHEFPGPAFPRPEPQQGGISGPSSPQPAHPLGEFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QPREITNQVVPQERQPEAELGRLLFQHEFPGPAFPRPEPQQGGISGPSSPQPAHPLGEFE
250 260 270 280 290 300
250 260 270 280 290 300
pF1KB8 DQQLASDDEEPGPAFPMQESQEPNLENIWGQEAAEVDQELVELLVKETEARFPDVANGFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DQQLASDDEEPGPAFPMQESQEPNLENIWGQEAAEVDQELVELLVKETEARFPDVANGFI
310 320 330 340 350 360
310 320 330 340 350 360
pF1KB8 EEIIHFKNYYDLNVLCNFLLENPDYPKREDRIIINPSSSLLASQDETKLPKIDFFDYSKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EEIIHFKNYYDLNVLCNFLLENPDYPKREDRIIINPSSSLLASQDETKLPKIDFFDYSKL
370 380 390 400 410 420
370 380 390 400 410 420
pF1KB8 TPLDQRCFIQAADLLMADFKVLSSQDIKWALHELKGHYAITRKALSDAIKKWQELSPETS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TPLDQRCFIQAADLLMADFKVLSSQDIKWALHELKGHYAITRKALSDAIKKWQELSPETS
430 440 450 460 470 480
430 440 450 460 470 480
pF1KB8 GKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDRRALLPAVQQEQEFYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDRRALLPAVQQEQEFYE
490 500 510 520 530 540
490 500 510 520 530 540
pF1KB8 QKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELTQCADAHLFCKECLIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELTQCADAHLFCKECLIR
550 560 570 580 590 600
550 560 570 580 590 600
pF1KB8 YAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVAAAYADELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVAAAYADELV
610 620 630 640 650 660
610 620 630 640 650 660
pF1KB8 RCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAEKDDIKYRTSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAEKDDIKYRTSI
670 680 690 700 710 720
670 680 690 700 710 720
pF1KB8 EEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSINGYDHFCQHPRSPGAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSINGYDHFCQHPRSPGAP
730 740 750 760 770 780
730 740 750 760 770 780
pF1KB8 CQECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKRIGPPLEKPVEKVQRVEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CQECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKRIGPPLEKPVEKVQRVEA
790 800 810 820 830 840
790 800 810 820 830 840
pF1KB8 LPRPVPQNLPQPQMPPYAFAHPPFPLPPVRPVFNNFPLNMGPIPAPYVPPLPNVRVNYDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LPRPVPQNLPQPQMPPYAFAHPPFPLPPVRPVFNNFPLNMGPIPAPYVPPLPNVRVNYDF
850 860 870 880 890 900
850 860
pF1KB8 GPIHMPLEHNLPMHFGPQPRHRF
:::::::::::::::::::::::
XP_005 GPIHMPLEHNLPMHFGPQPRHRF
910 920
>>XP_016867853 (OMIM: 212840,609948) PREDICTED: E3 ubiqu (720 aa)
initn: 4592 init1: 4092 opt: 4094 Z-score: 2534.0 bits: 479.7 E(85289): 2.1e-134
Smith-Waterman score: 4245; 91.7% identity (91.8% similar) in 695 aa overlap (26-663:26-720)
10 20 30 40 50 60
pF1KB8 MEEGNNNEEVIHLNNFHCHRGQEWINLRDGPITISDSSDEERIPMLVTPAPQQHEEEDLD
:::::::::::::::::::::::::::::::::::
XP_016 MEEGNNNEEVIHLNNFHCHRGQEWINLRDGPITISDSSDEERIPMLVTPAPQQHEEEDLD
10 20 30 40 50 60
pF1KB8 DDVILTE-----------------------------------------------------
:::::::
XP_016 DDVILTETNKPQRSRPNLIKPAAQWQDLKRLGEERPKKSRAAFESDKSSYFSVCNNPLFD
70 80 90 100 110 120
70 80 90 100 110 120
pF1KB8 ----DDSEDDYGEFLDLGPPGISEFTKPSGQTEREPKPGPSHNQAANDIVNPRSEQKVII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGAQDDSEDDYGEFLDLGPPGISEFTKPSGQTEREPKPGPSHNQAANDIVNPRSEQKVII
130 140 150 160 170 180
130 140 150 160 170 180
pF1KB8 LEEGSLLYTESDPLETQNQSSEDSETELLSNLGESAALADDQAIEEDCWLDHPYFQSLNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LEEGSLLYTESDPLETQNQSSEDSETELLSNLGESAALADDQAIEEDCWLDHPYFQSLNQ
190 200 210 220 230 240
190 200 210 220 230 240
pF1KB8 QPREITNQVVPQERQPEAELGRLLFQHEFPGPAFPRPEPQQGGISGPSSPQPAHPLGEFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QPREITNQVVPQERQPEAELGRLLFQHEFPGPAFPRPEPQQGGISGPSSPQPAHPLGEFE
250 260 270 280 290 300
250 260 270 280 290 300
pF1KB8 DQQLASDDEEPGPAFPMQESQEPNLENIWGQEAAEVDQELVELLVKETEARFPDVANGFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DQQLASDDEEPGPAFPMQESQEPNLENIWGQEAAEVDQELVELLVKETEARFPDVANGFI
310 320 330 340 350 360
310 320 330 340 350 360
pF1KB8 EEIIHFKNYYDLNVLCNFLLENPDYPKREDRIIINPSSSLLASQDETKLPKIDFFDYSKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EEIIHFKNYYDLNVLCNFLLENPDYPKREDRIIINPSSSLLASQDETKLPKIDFFDYSKL
370 380 390 400 410 420
370 380 390 400 410 420
pF1KB8 TPLDQRCFIQAADLLMADFKVLSSQDIKWALHELKGHYAITRKALSDAIKKWQELSPETS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TPLDQRCFIQAADLLMADFKVLSSQDIKWALHELKGHYAITRKALSDAIKKWQELSPETS
430 440 450 460 470 480
430 440 450 460 470 480
pF1KB8 GKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDRRALLPAVQQEQEFYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDRRALLPAVQQEQEFYE
490 500 510 520 530 540
490 500 510 520 530 540
pF1KB8 QKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELTQCADAHLFCKECLIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELTQCADAHLFCKECLIR
550 560 570 580 590 600
550 560 570 580 590 600
pF1KB8 YAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVAAAYADELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYERKAEEEVAAAYADELV
610 620 630 640 650 660
610 620 630 640 650 660
pF1KB8 RCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAEKDDIKYRTSI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
XP_016 RCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAEKDDIKYRTSM
670 680 690 700 710 720
670 680 690 700 710 720
pF1KB8 EEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSINGYDHFCQHPRSPGAP
>>XP_011513738 (OMIM: 212840,609948) PREDICTED: E3 ubiqu (488 aa)
initn: 3493 init1: 3493 opt: 3493 Z-score: 2166.5 bits: 411.1 E(85289): 6.2e-114
Smith-Waterman score: 3493; 100.0% identity (100.0% similar) in 488 aa overlap (379-866:1-488)
350 360 370 380 390 400
pF1KB8 ETKLPKIDFFDYSKLTPLDQRCFIQAADLLMADFKVLSSQDIKWALHELKGHYAITRKAL
::::::::::::::::::::::::::::::
XP_011 MADFKVLSSQDIKWALHELKGHYAITRKAL
10 20 30
410 420 430 440 450 460
pF1KB8 SDAIKKWQELSPETSGKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SDAIKKWQELSPETSGKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDR
40 50 60 70 80 90
470 480 490 500 510 520
pF1KB8 RALLPAVQQEQEFYEQKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RALLPAVQQEQEFYEQKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELT
100 110 120 130 140 150
530 540 550 560 570 580
pF1KB8 QCADAHLFCKECLIRYAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QCADAHLFCKECLIRYAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYER
160 170 180 190 200 210
590 600 610 620 630 640
pF1KB8 KAEEEVAAAYADELVRCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KAEEEVAAAYADELVRCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTC
220 230 240 250 260 270
650 660 670 680 690 700
pF1KB8 EELAEKDDIKYRTSIEEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EELAEKDDIKYRTSIEEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSIN
280 290 300 310 320 330
710 720 730 740 750 760
pF1KB8 GYDHFCQHPRSPGAPCQECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKRIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GYDHFCQHPRSPGAPCQECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKRIG
340 350 360 370 380 390
770 780 790 800 810 820
pF1KB8 PPLEKPVEKVQRVEALPRPVPQNLPQPQMPPYAFAHPPFPLPPVRPVFNNFPLNMGPIPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PPLEKPVEKVQRVEALPRPVPQNLPQPQMPPYAFAHPPFPLPPVRPVFNNFPLNMGPIPA
400 410 420 430 440 450
830 840 850 860
pF1KB8 PYVPPLPNVRVNYDFGPIHMPLEHNLPMHFGPQPRHRF
::::::::::::::::::::::::::::::::::::::
XP_011 PYVPPLPNVRVNYDFGPIHMPLEHNLPMHFGPQPRHRF
460 470 480
>>XP_016867854 (OMIM: 212840,609948) PREDICTED: E3 ubiqu (488 aa)
initn: 3493 init1: 3493 opt: 3493 Z-score: 2166.5 bits: 411.1 E(85289): 6.2e-114
Smith-Waterman score: 3493; 100.0% identity (100.0% similar) in 488 aa overlap (379-866:1-488)
350 360 370 380 390 400
pF1KB8 ETKLPKIDFFDYSKLTPLDQRCFIQAADLLMADFKVLSSQDIKWALHELKGHYAITRKAL
::::::::::::::::::::::::::::::
XP_016 MADFKVLSSQDIKWALHELKGHYAITRKAL
10 20 30
410 420 430 440 450 460
pF1KB8 SDAIKKWQELSPETSGKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SDAIKKWQELSPETSGKRKKRKQMNQYSYIDFKFEQGDIKIEKRMFFLENKRRHCRSYDR
40 50 60 70 80 90
470 480 490 500 510 520
pF1KB8 RALLPAVQQEQEFYEQKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RALLPAVQQEQEFYEQKIKEMAEHEDFLLALQMNEEQYQKDGQLIECRCCYGEFPFEELT
100 110 120 130 140 150
530 540 550 560 570 580
pF1KB8 QCADAHLFCKECLIRYAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QCADAHLFCKECLIRYAQEAVFGSGKLELSCMEGSCTCSFPTSELEKVLPQTILYKYYER
160 170 180 190 200 210
590 600 610 620 630 640
pF1KB8 KAEEEVAAAYADELVRCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KAEEEVAAAYADELVRCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTC
220 230 240 250 260 270
650 660 670 680 690 700
pF1KB8 EELAEKDDIKYRTSIEEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSIN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EELAEKDDIKYRTSIEEKMTAARIRKCHKCGTGLIKSEGCNRMSCRCGAQMCYLCRVSIN
280 290 300 310 320 330
710 720 730 740 750 760
pF1KB8 GYDHFCQHPRSPGAPCQECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKRIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GYDHFCQHPRSPGAPCQECSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTFKRIG
340 350 360 370 380 390
770 780 790 800 810 820
pF1KB8 PPLEKPVEKVQRVEALPRPVPQNLPQPQMPPYAFAHPPFPLPPVRPVFNNFPLNMGPIPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PPLEKPVEKVQRVEALPRPVPQNLPQPQMPPYAFAHPPFPLPPVRPVFNNFPLNMGPIPA
400 410 420 430 440 450
830 840 850 860
pF1KB8 PYVPPLPNVRVNYDFGPIHMPLEHNLPMHFGPQPRHRF
::::::::::::::::::::::::::::::::::::::
XP_016 PYVPPLPNVRVNYDFGPIHMPLEHNLPMHFGPQPRHRF
460 470 480
>>NP_006453 (OMIM: 610924,615895) ranBP-type and C3HC4-t (468 aa)
initn: 87 init1: 87 opt: 286 Z-score: 193.9 bits: 46.1 E(85289): 0.00046
Smith-Waterman score: 290; 25.0% identity (53.7% similar) in 296 aa overlap (467-730:193-467)
440 450 460 470 480 490
pF1KB8 YIDFKFEQGDIKIEKRMFFLENKRRHCRSYDRRALLPAVQQEQEFYEQKIKEMAEHEDFL
..:: : . .. . :.:. :.. .. ..:
NP_006 INKPTRPGCEMCCRARPEAYQVPASYQPDEEERARLAGEEEALRQYQQR-KQQQQEGNYL
170 180 190 200 210 220
500 510 520 530 540 550
pF1KB8 LALQMNEEQYQKDGQLIECRCCYGEF-PFEE--LTQCADAHLFCKECL---IRYAQEAVF
.:..... . . :: ::. . : : : .: : ::.::: :: .:::
NP_006 QHVQLDQRSLVLNTEPAECPVCYSVLAPGEAVVLREC--LHTFCRECLQGTIRNSQEA--
230 240 250 260 270
560 570 580 590 600
pF1KB8 GSGKLELSC--MEGSCTCSFPTSELEKVLPQTILYKYYER-------KAEEEVAAAYADE
:.:: .... .:: . ::. . . . :.: ::.. : .:
NP_006 -----EVSCPFIDNTYSCS--GKLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYH--
280 290 300 310 320
610 620 630 640 650
pF1KB8 LVRCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAE------KD
. :.:. ....::..:.:: : . .: :... :. ..:.: : ..
NP_006 -CKTPDCKGWCFFEDDVNEFTCPV--CFHVNCLLCKAI---HEQMNCKEYQEDLALRAQN
330 340 350 360 370 380
660 670 680 690 700
pF1KB8 DIKYRTSIEE---KMTAARIRKCHKCGTGLIKSEGCNRMSCR-CGAQMCYLC---RVSIN
:. : . : . .. .: .: . :..::. . : : ...:.. : . .
NP_006 DVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPG
390 400 410 420 430 440
710 720 730 740 750 760
pF1KB8 GYDHF---CQHPRSPGAPCQE-CSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTF
: :. : : ::. :. :
NP_006 GPGDTSGGCRC-RVNGIPCHPSCQNCH
450 460
>>NP_112506 (OMIM: 610924,615895) ranBP-type and C3HC4-t (510 aa)
initn: 87 init1: 87 opt: 286 Z-score: 193.4 bits: 46.1 E(85289): 0.00049
Smith-Waterman score: 290; 25.0% identity (53.7% similar) in 296 aa overlap (467-730:235-509)
440 450 460 470 480 490
pF1KB8 YIDFKFEQGDIKIEKRMFFLENKRRHCRSYDRRALLPAVQQEQEFYEQKIKEMAEHEDFL
..:: : . .. . :.:. :.. .. ..:
NP_112 INKPTRPGCEMCCRARPEAYQVPASYQPDEEERARLAGEEEALRQYQQR-KQQQQEGNYL
210 220 230 240 250 260
500 510 520 530 540 550
pF1KB8 LALQMNEEQYQKDGQLIECRCCYGEF-PFEE--LTQCADAHLFCKECL---IRYAQEAVF
.:..... . . :: ::. . : : : .: : ::.::: :: .:::
NP_112 QHVQLDQRSLVLNTEPAECPVCYSVLAPGEAVVLREC--LHTFCRECLQGTIRNSQEA--
270 280 290 300 310
560 570 580 590 600
pF1KB8 GSGKLELSC--MEGSCTCSFPTSELEKVLPQTILYKYYER-------KAEEEVAAAYADE
:.:: .... .:: . ::. . . . :.: ::.. : .:
NP_112 -----EVSCPFIDNTYSCS--GKLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYH--
320 330 340 350 360 370
610 620 630 640 650
pF1KB8 LVRCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAE------KD
. :.:. ....::..:.:: : . .: :... :. ..:.: : ..
NP_112 -CKTPDCKGWCFFEDDVNEFTCPV--CFHVNCLLCKAI---HEQMNCKEYQEDLALRAQN
380 390 400 410 420
660 670 680 690 700
pF1KB8 DIKYRTSIEE---KMTAARIRKCHKCGTGLIKSEGCNRMSCR-CGAQMCYLC---RVSIN
:. : . : . .. .: .: . :..::. . : : ...:.. : . .
NP_112 DVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPG
430 440 450 460 470 480
710 720 730 740 750 760
pF1KB8 GYDHF---CQHPRSPGAPCQE-CSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTF
: :. : : ::. :. :
NP_112 GPGDTSGGCRC-RVNGIPCHPSCQNCH
490 500 510
>>XP_005260702 (OMIM: 610924,615895) PREDICTED: ranBP-ty (527 aa)
initn: 87 init1: 87 opt: 286 Z-score: 193.2 bits: 46.1 E(85289): 0.0005
Smith-Waterman score: 290; 25.0% identity (53.7% similar) in 296 aa overlap (467-730:252-526)
440 450 460 470 480 490
pF1KB8 YIDFKFEQGDIKIEKRMFFLENKRRHCRSYDRRALLPAVQQEQEFYEQKIKEMAEHEDFL
..:: : . .. . :.:. :.. .. ..:
XP_005 INKPTRPGCEMCCRARPEAYQVPASYQPDEEERARLAGEEEALRQYQQR-KQQQQEGNYL
230 240 250 260 270 280
500 510 520 530 540 550
pF1KB8 LALQMNEEQYQKDGQLIECRCCYGEF-PFEE--LTQCADAHLFCKECL---IRYAQEAVF
.:..... . . :: ::. . : : : .: : ::.::: :: .:::
XP_005 QHVQLDQRSLVLNTEPAECPVCYSVLAPGEAVVLREC--LHTFCRECLQGTIRNSQEA--
290 300 310 320 330
560 570 580 590 600
pF1KB8 GSGKLELSC--MEGSCTCSFPTSELEKVLPQTILYKYYER-------KAEEEVAAAYADE
:.:: .... .:: . ::. . . . :.: ::.. : .:
XP_005 -----EVSCPFIDNTYSCS--GKLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYH--
340 350 360 370 380
610 620 630 640 650
pF1KB8 LVRCPSCSFPALLDSDVKRFSCPNPHCRKETCRKCQGLWKEHNGLTCEELAE------KD
. :.:. ....::..:.:: : . .: :... :. ..:.: : ..
XP_005 -CKTPDCKGWCFFEDDVNEFTCPV--CFHVNCLLCKAI---HEQMNCKEYQEDLALRAQN
390 400 410 420 430 440
660 670 680 690 700
pF1KB8 DIKYRTSIEE---KMTAARIRKCHKCGTGLIKSEGCNRMSCR-CGAQMCYLC---RVSIN
:. : . : . .. .: .: . :..::. . : : ...:.. : . .
XP_005 DVAARQTTEMLKVMLQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPG
450 460 470 480 490 500
710 720 730 740 750 760
pF1KB8 GYDHF---CQHPRSPGAPCQE-CSRCSLWTDPTEDDEKLIEEIQKEAEEEQKRKNGENTF
: :. : : ::. :. :
XP_005 GPGDTSGGCRC-RVNGIPCHPSCQNCH
510 520
866 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 12:42:53 2016 done: Fri Nov 4 12:42:55 2016
Total Scan time: 15.440 Total Display time: 0.230
Function used was FASTA [36.3.4 Apr, 2011]