FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8428, 467 aa
  1>>>pF1KB8428 467 - 467 aa - 467 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9968+/-0.000816; mu= 7.5367+/- 0.050
 mean_var=156.3716+/-31.269, 0's: 0 Z-trim(112.9): 8  B-trim: 75 in 1/52
 Lambda= 0.102564
 statistics sampled from 13591 (13597) to 13591 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.418), width:  16
 Scan time:  3.620

The best scores are:                                      opt bits E(32554)
CCDS509.1 DMAP1 gene_id:55929|Hs108|chr1           ( 467) 3075 466.4 2.7e-131


>>CCDS509.1 DMAP1 gene_id:55929|Hs108|chr1                (467 aa)
 initn: 3075 init1: 3075 opt: 3075  Z-score: 2470.5  bits: 466.4 E(32554): 2.7e-131
Smith-Waterman score: 3075; 99.4% identity (99.8% similar) in 467 aa overlap (1-467:1-467)

               10        20        30        40        50        60
pF1KB8 MATGADVRDILELGGPEGDAASGTISKKDIINPDKKKSKKSSETLTFKRPEGMHREVYAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MATGADVRDILELGGPEGDAASGTISKKDIINPDKKKSKKSSETLTFKRPEGMHREVYAL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHWRRAAEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 LYSDKKDAPPLLPSDTGQGYRTVKAKLGSKKVRPWKWMPFTNPARKDGAMFFHWRRAAEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 GKDYPFARFNKTVQEPVYSEQEYQLYLHDNAWTKAETDHLFDLSRRFDLRFVVIHDRYDH
       :::::::::::::: ::::::::::::::.::::::::::::::::::::::::::::::
CCDS50 GKDYPFARFNKTVQVPVYSEQEYQLYLHDDAWTKAETDHLFDLSRRFDLRFVVIHDRYDH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 QQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIPVFDAGHERRRKEQLERLYNRTPEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 QQFKKRSVEDLKERYYHICAKLANVRAVPGTDLKIPVFDAGHERRRKEQLERLYNRTPEQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 VAEEEYLLQELRKIEARKKEREKRSQDLQKLITAADTTAEQRRTERKAPKKKLPQKKEAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 VAEEEYLLQELRKIEARKKEREKRSQDLQKLITAADTTAEQRRTERKAPKKKLPQKKEAE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 KPAVPETAGIKFPDFKSAGVTLRSQRMKLPSSVGQKKIKALEQMLLELGVELSPTPTEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 KPAVPETAGIKFPDFKSAGVTLRSQRMKLPSSVGQKKIKALEQMLLELGVELSPTPTEEL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 VHMFNELRSDLVLLYELKQACANCEYELQMLRHRHEALARAGVLGGPATPASGPGPASAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 VHMFNELRSDLVLLYELKQACANCEYELQMLRHRHEALARAGVLGGPATPASGPGPASAE
              370       380       390       400       410       420

              430       440       450       460       
pF1KB8 PAVSEPGLGPDPKDTIIDVVGAPLTPNSRKRRESASSSSSVKKAKKP
       :::.:::::::::::::::::::::::::::::::::::::::::::
CCDS50 PAVTEPGLGPDPKDTIIDVVGAPLTPNSRKRRESASSSSSVKKAKKP
              430       440       450       460       




467 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:49:40 2016 done: Fri Nov  4 12:49:41 2016
 Total Scan time:  3.620 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]