FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8440, 421 aa
  1>>>pF1KB8440 421 - 421 aa - 421 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.5287+/-0.00127; mu= -16.2848+/- 0.078
 mean_var=684.9652+/-137.365, 0's: 0 Z-trim(116.9): 153  B-trim: 58 in 1/55
 Lambda= 0.049005
 statistics sampled from 17437 (17590) to 17437 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.54), width:  16
 Scan time:  2.620

The best scores are:                                      opt bits E(32554)
CCDS14101.1 ACR gene_id:49|Hs108|chr22             ( 421) 3025 228.4   1e-59


>>CCDS14101.1 ACR gene_id:49|Hs108|chr22                  (421 aa)
 initn: 3025 init1: 3025 opt: 3025  Z-score: 1185.6  bits: 228.4 E(32554): 1e-59
Smith-Waterman score: 3025; 99.8% identity (100.0% similar) in 421 aa overlap (1-421:1-421)

               10        20        30        40        50        60
pF1KB8 MVEMLPTAILLVLAVSVVAKDNATCDGPCGLRFRQNPQGGVRIVGGKAAQHGAWPWMVSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MVEMLPTAILLVLAVSVVAKDNATCDGPCGLRFRQNPQGGVRIVGGKAAQHGAWPWMVSL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QIFTYNSHRYHTCGGSLLNSRWVLTAAHCFVGKNNVHDWRLVFGAKEITYGNNKPVKAPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QIFTYNSHRYHTCGGSLLNSRWVLTAAHCFVGKNNVHDWRLVFGAKEITYGNNKPVKAPL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 QERYVEKIIIHEKYNSATEGNDIALVEITPPISCGRFIGPGCLPHFKAGLPRGSQSCWVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QERYVEKIIIHEKYNSATEGNDIALVEITPPISCGRFIGPGCLPHFKAGLPRGSQSCWVA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 GWGYIEEKAPRPSSILMEARVDLIDLDLCNSTQWYNGRVQPTNVCAGYPVGKIDTCQGDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GWGYIEEKAPRPSSILMEARVDLIDLDLCNSTQWYNGRVQPTNVCAGYPVGKIDTCQGDS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 GGPLMCKDSKESAYVVVGITSWGVGCARAKRPGIYTATWPYLNWIASKIGSNALRVIQSA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::
CCDS14 GGPLMCKDSKESAYVVVGITSWGVGCARAKRPGIYTATWPYLNWIASKIGSNALRMIQSA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 TPPPPTTRPPPIRPPFSHPISAHLPWYFQPPPRPLPPRPPAAQPRPPPSPPPPPPPPASP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 TPPPPTTRPPPIRPPFSHPISAHLPWYFQPPPRPLPPRPPAAQPRPPPSPPPPPPPPASP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 LPPPPPPPPPTPSSTTKLPQGLSFAKRLQQLIEVLKGKTYSDGKNHYDMETTELPELTST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LPPPPPPPPPTPSSTTKLPQGLSFAKRLQQLIEVLKGKTYSDGKNHYDMETTELPELTST
              370       380       390       400       410       420

        
pF1KB8 S
       :
CCDS14 S
        




421 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:34:00 2016 done: Sat Nov  5 21:34:00 2016
 Total Scan time:  2.620 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]