FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8442, 126 aa
  1>>>pF1KB8442 126 - 126 aa - 126 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9677+/-0.000623; mu= 8.1212+/- 0.038
 mean_var=80.8947+/-16.007, 0's: 0 Z-trim(112.6): 7  B-trim: 0 in 0/52
 Lambda= 0.142598
 statistics sampled from 13367 (13370) to 13367 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.411), width:  16
 Scan time:  1.490

The best scores are:                                      opt bits E(32554)
CCDS13974.1 CBY1 gene_id:25776|Hs108|chr22         ( 126)  809 174.9 1.2e-44
CCDS74861.1 CBY1 gene_id:25776|Hs108|chr22         ( 169)  809 175.0 1.5e-44
CCDS47354.1 CBY3 gene_id:646019|Hs108|chr5         ( 242)  290 68.3 2.8e-12


>>CCDS13974.1 CBY1 gene_id:25776|Hs108|chr22              (126 aa)
 initn: 809 init1: 809 opt: 809  Z-score: 915.3  bits: 174.9 E(32554): 1.2e-44
Smith-Waterman score: 809; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126)

               10        20        30        40        50        60
pF1KB8 MPFFGNTFSPKKTPPRKSASLSNLHSLDRSTREVELGLEYGSPTMNLAGQSLKFENGQWI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MPFFGNTFSPKKTPPRKSASLSNLHSLDRSTREVELGLEYGSPTMNLAGQSLKFENGQWI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AETGVSGGVDRREVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AETGVSGGVDRREVQRLRRRNQQLEEENNLLRLKVDILLDMLSESTAESHLMEKELDELR
               70        80        90       100       110       120

             
pF1KB8 ISRKRK
       ::::::
CCDS13 ISRKRK
             

>>CCDS74861.1 CBY1 gene_id:25776|Hs108|chr22              (169 aa)
 initn: 809 init1: 809 opt: 809  Z-score: 913.3  bits: 175.0 E(32554): 1.5e-44
Smith-Waterman score: 809; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:44-169)

                                             10        20        30
pF1KB8                               MPFFGNTFSPKKTPPRKSASLSNLHSLDRS
                                     ::::::::::::::::::::::::::::::
CCDS74 PDANEDSLCNSVHVQWPGEGSTGFAFIRPKMPFFGNTFSPKKTPPRKSASLSNLHSLDRS
            20        30        40        50        60        70   

               40        50        60        70        80        90
pF1KB8 TREVELGLEYGSPTMNLAGQSLKFENGQWIAETGVSGGVDRREVQRLRRRNQQLEEENNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TREVELGLEYGSPTMNLAGQSLKFENGQWIAETGVSGGVDRREVQRLRRRNQQLEEENNL
            80        90       100       110       120       130   

              100       110       120      
pF1KB8 LRLKVDILLDMLSESTAESHLMEKELDELRISRKRK
       ::::::::::::::::::::::::::::::::::::
CCDS74 LRLKVDILLDMLSESTAESHLMEKELDELRISRKRK
           140       150       160         

>>CCDS47354.1 CBY3 gene_id:646019|Hs108|chr5              (242 aa)
 initn: 288 init1: 190 opt: 290  Z-score: 333.9  bits: 68.3 E(32554): 2.8e-12
Smith-Waterman score: 290; 41.4% identity (73.3% similar) in 116 aa overlap (8-115:88-203)

                                      10        20        30       
pF1KB8                        MPFFGNTFSPKKTPPRKSASLSNLHSLDRSTREVELG
                                     :::.. : :.  :::... ::..::..:::
CCDS47 LATFECSATSHASRLWQTLQQFWADHISRPFSPRRPPLRRMPSLSTFYLLDHNTRQAELG
        60        70        80        90       100       110       

        40        50        60            70            80         
pF1KB8 LEYGSPTMNLAGQSLKFENGQWIAETGV----SGGVDRR----EVQRLRRRNQQLEEENN
       : ::.: : :..:.. :..:.: .:. .    :  ..:     ..:  : ..: : ::::
CCDS47 LAYGAPCMRLSNQAFVFRGGRWTTESQLARTRSPLLSRTAWGWKAQVQRSKSQVLLEENN
       120       130       140       150       160       170       

      90       100       110       120                             
pF1KB8 LLRLKVDILLDMLSESTAESHLMEKELDELRISRKRK                       
        :.:. ..:.:::.:. :. ::.::.                                  
CCDS47 YLKLQQELLIDMLTETMARMHLLEKQRNPEVIPTAAARAGQRKMRKRAGASAGVLMIQPC
       180       190       200       210       220       230       




126 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:55:41 2016 done: Fri Nov  4 12:55:42 2016
 Total Scan time:  1.490 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]