FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8444, 303 aa
  1>>>pF1KB8444 303 - 303 aa - 303 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6928+/-0.000956; mu= 6.0356+/- 0.057
 mean_var=214.8616+/-46.230, 0's: 0 Z-trim(112.1): 89  B-trim: 4 in 1/52
 Lambda= 0.087497
 statistics sampled from 12843 (12932) to 12843 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.397), width:  16
 Scan time:  2.710

The best scores are:                                      opt bits E(32554)
CCDS13785.1 CRKL gene_id:1399|Hs108|chr22          ( 303) 2078 274.7 6.3e-74
CCDS11002.1 CRK gene_id:1398|Hs108|chr17           ( 304)  642 93.4 2.3e-19


>>CCDS13785.1 CRKL gene_id:1399|Hs108|chr22               (303 aa)
 initn: 2078 init1: 2078 opt: 2078  Z-score: 1440.7  bits: 274.7 E(32554): 6.3e-74
Smith-Waterman score: 2078; 100.0% identity (100.0% similar) in 303 aa overlap (1-303:1-303)

               10        20        30        40        50        60
pF1KB8 MSSARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSSARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 YIINSLPNRRFKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YIINSLPNRRFKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVSAPNLPT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 AEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 KAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNPD
              250       260       270       280       290       300

          
pF1KB8 ENE
       :::
CCDS13 ENE
          

>>CCDS11002.1 CRK gene_id:1398|Hs108|chr17                (304 aa)
 initn: 1223 init1: 403 opt: 642  Z-score: 461.1  bits: 93.4 E(32554): 2.3e-19
Smith-Waterman score: 1135; 57.5% identity (73.8% similar) in 320 aa overlap (6-302:5-302)

               10        20        30        40        50        60
pF1KB8 MSSARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGDYVLSVSENSRVSH
            ::: .::.:: : .::::: . :::::::.:::::::: ::::::::::::::::
CCDS11  MAGNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGDYVLSVSENSRVSH
                10        20        30        40        50         

                                70        80        90       100   
pF1KB8 YIINSLPNR-----------------RFKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAP
       :::::   :                 :..::::::: :::::::::::::::::::::. 
CCDS11 YIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPVS
      60        70        80        90       100       110         

           110       120       130       140       150       160   
pF1KB8 RYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSA
       :       : .. ..   ... ::::.:.:: ::: ::::::::.:: : .:::::::.:
CCDS11 R-------SRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNA
     120              130       140       150       160       170  

           170       180             190       200       210       
pF1KB8 RNKDGRVGMIPVPYVEKLVRSSPH------GKHGNRNSNSYGIPEPAHAYAQPQTTTPLP
       ....:. ::::::::::   .:        :.. . . .  : :::.  ::::...    
CCDS11 EDSEGKRGMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGGPEPG-PYAQPSVN----
            180       190       200       210        220           

       220       230       240       250       260       270       
pF1KB8 AVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEG
                 ::::. ::::..:..:::::: ::::::::::::..::::..:..:::::
CCDS11 ----------TPLPNLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEG
                 230       240       250       260       270       

       280       290       300    
pF1KB8 EVNGRKGLFPFTHVKIFDPQNPDENE 
       : ::..: ::::::...: :::::.  
CCDS11 ECNGKRGHFPFTHVRLLDQQNPDEDFS
       280       290       300    




303 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:56:09 2016 done: Fri Nov  4 12:56:09 2016
 Total Scan time:  2.710 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]