FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8446, 309 aa
  1>>>pF1KB8446 309 - 309 aa - 309 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6841+/-0.0011; mu= 0.8110+/- 0.065
 mean_var=201.9940+/-41.286, 0's: 0 Z-trim(109.5): 25  B-trim: 170 in 2/51
 Lambda= 0.090241
 statistics sampled from 10958 (10966) to 10958 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.687), E-opt: 0.2 (0.337), width:  16
 Scan time:  2.690

The best scores are:                                      opt bits E(32554)
CCDS14066.2 RIBC2 gene_id:26150|Hs108|chr22        ( 382) 2046 278.8 4.6e-75
CCDS35299.1 RIBC1 gene_id:158787|Hs108|chrX        ( 379)  647 96.7 3.1e-20


>>CCDS14066.2 RIBC2 gene_id:26150|Hs108|chr22             (382 aa)
 initn: 2046 init1: 2046 opt: 2046  Z-score: 1461.2  bits: 278.8 E(32554): 4.6e-75
Smith-Waterman score: 2046; 99.4% identity (100.0% similar) in 309 aa overlap (1-309:74-382)

                                             10        20        30
pF1KB8                               MRQNDKIMCILENRKKRDRKNLCRAINDFQ
                                     ::::::::::::::::::::::::::::::
CCDS14 GDTEAWDVQVHDQKIKEATEKARHETFAAEMRQNDKIMCILENRKKRDRKNLCRAINDFQ
            50        60        70        80        90       100   

               40        50        60        70        80        90
pF1KB8 QSFQKPETRREFDLSDPLALKKDLPARQSDNDVRNTISGMQKFMGEDLNFHERKKFQEEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 QSFQKPETRREFDLSDPLALKKDLPARQSDNDVRNTISGMQKFMGEDLNFHERKKFQEEQ
           110       120       130       140       150       160   

              100       110       120       130       140       150
pF1KB8 NREWSLQQQREWKNARAEQKCAEALYTETRLQFDETAKHLQKLESTTRKAVCASVKDFNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 NREWSLQQQREWKNARAEQKCAEALYTETRLQFDETAKHLQKLESTTRKAVCASVKDFNK
           170       180       190       200       210       220   

              160       170       180       190       200       210
pF1KB8 SQAIESVERKKQEKKQEQEDNLAEITNLLRGDLLSENPQQAASSLGPHRVVPDRWKGMTQ
       ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
CCDS14 SQAIESVERKKQEKKQEQEDNLAEITNLLRGDLLSENPQQAASSFGPHRVVPDRWKGMTQ
           230       240       250       260       270       280   

              220       230       240       250       260       270
pF1KB8 EQLEQIRLVQKQQIQEKLRLQEEKRQRDLDWDRRRIQGARATLLFERQQWRQQRDLRRAL
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS14 EQLEQIRLVQKQQIQEKLRLQEEKRQRDLDWDRRRIQGARATLLFERQQWRRQRDLRRAL
           290       300       310       320       330       340   

              280       290       300         
pF1KB8 DSSNLSLAKEQHLQKKYMNEVYTNQPTGDYFTQFNTGSR
       :::::::::::::::::::::::::::::::::::::::
CCDS14 DSSNLSLAKEQHLQKKYMNEVYTNQPTGDYFTQFNTGSR
           350       360       370       380  

>>CCDS35299.1 RIBC1 gene_id:158787|Hs108|chrX             (379 aa)
 initn: 670 init1: 527 opt: 647  Z-score: 476.9  bits: 96.7 E(32554): 3.1e-20
Smith-Waterman score: 647; 36.4% identity (67.5% similar) in 308 aa overlap (3-309:72-379)

                                           10        20        30  
pF1KB8                             MRQNDKIMCILENRKKRDRKNLCRAINDFQQS
                                     : : .. .::...    ..: . ...:...
CCDS35 VQALNNQVGDRKRREAAERSKEAAYGTSQVQYDVVVQMLEKEEADRTRQLAKKVQEFREQ
              50        60        70        80        90       100 

             40        50        60        70        80        90  
pF1KB8 FQKPETRREFDLSDPLALKKDLPARQSDNDVRNTISGMQKFMGEDLNFHERKKFQEEQNR
        :. .. :::.: ::  . : ::.  : ...    ...: : ::::.   : ..:. : :
CCDS35 KQQLKNGREFSLWDPGQVWKGLPTYLSYSNTYPGPASLQYFSGEDLDRDTRLRMQQGQFR
             110       120       130       140       150       160 

            100       110       120       130       140       150  
pF1KB8 EWSLQQQREWKNARAEQKCAEALYTETRLQFDETAKHLQKLESTTRKAVCASVKDFNKSQ
           .::.: ..:..... ..:: .. :: .:  : :: .:: . : :.  .. . ::.:
CCDS35 YNLERQQQEQQQAKVDENYTDALSNQLRLAMDAQATHLARLEESCRAAMMCAMANANKAQ
             170       180       190       200       210       220 

            160       170       180       190       200       210  
pF1KB8 AIESVERKKQEKKQEQEDNLAEITNLLRGDLLSENPQQAASSLGPHRVVPDRWKGMTQEQ
       :  .. :.. :...::. ::::: .   .:::.:::: :   ..:.::.:  ::::: ::
CCDS35 AAVQAGRQRCERQREQKANLAEIQHQSTSDLLTENPQVAQHPMAPYRVLPYCWKGMTPEQ
             230       240       250       260       270       280 

            220       230       240       250       260       270  
pF1KB8 LEQIRLVQKQQIQEKLRLQEEKRQRDLDWDRRRIQGARATLLFERQQWRQQRDLRRALDS
          ::  :. : ..:   .. ..  : .:  . ...:.:.: .:.:. .    ..:.: :
CCDS35 QAAIRKEQEVQRSKKQAHRQAEKTLDTEWKSQTMSSAQAVLELEEQERELCAVFQRGLGS
             290       300       310       320       330       340 

            280       290        300         
pF1KB8 SNLSLAKEQHLQKKYMNEV-YTNQPTGDYFTQFNTGSR
        : .::.::. :. :.: : ::::::..:  ::::.::
CCDS35 FNQQLANEQKAQQDYLNSVIYTNQPTAQYHQQFNTSSR
             350       360       370         




309 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:45:04 2016 done: Sat Nov  5 21:45:05 2016
 Total Scan time:  2.690 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]