FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8447, 469 aa
  1>>>pF1KB8447 469 - 469 aa - 469 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8969+/-0.000382; mu= 20.1042+/- 0.024
 mean_var=66.3578+/-13.575, 0's: 0 Z-trim(111.7): 11  B-trim: 0 in 0/53
 Lambda= 0.157445
 statistics sampled from 20359 (20360) to 20359 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.603), E-opt: 0.2 (0.239), width:  16
 Scan time:  7.150

The best scores are:                                      opt bits E(85289)
NP_056195 (OMIM: 612058) sorting and assembly mach ( 469) 3175 730.4 2.5e-210


>>NP_056195 (OMIM: 612058) sorting and assembly machiner  (469 aa)
 initn: 3175 init1: 3175 opt: 3175  Z-score: 3897.1  bits: 730.4 E(85289): 2.5e-210
Smith-Waterman score: 3175; 100.0% identity (100.0% similar) in 469 aa overlap (1-469:1-469)

               10        20        30        40        50        60
pF1KB8 MGTVHARSLEPLPSSGPDFGGLGEEAEFVEVEPEAKQEILENKDVVVQHVHFDGLGRTKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MGTVHARSLEPLPSSGPDFGGLGEEAEFVEVEPEAKQEILENKDVVVQHVHFDGLGRTKD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DIIICEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 DIIICEIGDVFKAKNLIEVMRKSHEAREKLLRLGIFRQVDVLIDTCQGDDALPNGLDVTF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 EVTELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EVTELRRLTGSYNTMVGNNEGSMVLGLKLPNLLGRAEKVTFQFSYGTKETSYGLSFFKPR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PGNFERNFSVNLYKVTGQFPWSSLRETDRGMSAEYSFPIWKTSHTVKWEGVWRELGCLSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 PGNFERNFSVNLYKVTGQFPWSSLRETDRGMSAEYSFPIWKTSHTVKWEGVWRELGCLSR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 TASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TASFAVRKESGHSLKSSLSHAMVIDSRNSSILPRRGALLKVNQELAGYTGGDVSFIKEDF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 ELQLNKQLIFDSVFSASFWGGMLVPIGDKPSSIADRFYLGGPTSIRGFSMHSIGPQSEGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 ELQLNKQLIFDSVFSASFWGGMLVPIGDKPSSIADRFYLGGPTSIRGFSMHSIGPQSEGD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 YLGGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLNAGNLCNLNYGEGPKAHIRKLAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 YLGGEAYWAGGLHLYTPLPFRPGQGGFGELFRTHFFLNAGNLCNLNYGEGPKAHIRKLAE
              370       380       390       400       410       420

              430       440       450       460         
pF1KB8 CIRWSYGAGIVLRLGNIARLELNYCVPMGVQTGDRICDGVQFGAGIRFL
       :::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 CIRWSYGAGIVLRLGNIARLELNYCVPMGVQTGDRICDGVQFGAGIRFL
              430       440       450       460         




469 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:58:01 2016 done: Fri Nov  4 12:58:02 2016
 Total Scan time:  7.150 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]