FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8449, 135 aa
  1>>>pF1KB8449 135 - 135 aa - 135 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9408+/-0.000667; mu= 12.3490+/- 0.040
 mean_var=55.0769+/-10.959, 0's: 0 Z-trim(108.7): 27  B-trim: 0 in 0/51
 Lambda= 0.172818
 statistics sampled from 10345 (10372) to 10345 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.319), width:  16
 Scan time:  1.660

The best scores are:                                      opt bits E(32554)
CCDS13954.1 LGALS1 gene_id:3956|Hs108|chr22        ( 135)  935 240.6 2.2e-64
CCDS13950.1 LGALS2 gene_id:3957|Hs108|chr22        ( 132)  391 105.0 1.4e-23
CCDS33012.1 LGALS7 gene_id:3963|Hs108|chr19        ( 136)  244 68.4 1.6e-12
CCDS42565.1 LGALS7B gene_id:653499|Hs108|chr19     ( 136)  244 68.4 1.6e-12
CCDS41956.1 LGALS3 gene_id:3958|Hs108|chr14        ( 250)  236 66.5 1.1e-11


>>CCDS13954.1 LGALS1 gene_id:3956|Hs108|chr22             (135 aa)
 initn: 935 init1: 935 opt: 935  Z-score: 1269.5  bits: 240.6 E(32554): 2.2e-64
Smith-Waterman score: 935; 100.0% identity (100.0% similar) in 135 aa overlap (1-135:1-135)

               10        20        30        40        50        60
pF1KB8 MACGLVASNLNLKPGECLRVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MACGLVASNLNLKPGECLRVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 CNSKDGGAWGTEQREAVFPFQPGSVAEVCITFDQANLTVKLPDGYEFKFPNRLNLEAINY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CNSKDGGAWGTEQREAVFPFQPGSVAEVCITFDQANLTVKLPDGYEFKFPNRLNLEAINY
               70        80        90       100       110       120

              130     
pF1KB8 MAADGDFKIKCVAFD
       :::::::::::::::
CCDS13 MAADGDFKIKCVAFD
              130     

>>CCDS13950.1 LGALS2 gene_id:3957|Hs108|chr22             (132 aa)
 initn: 236 init1: 236 opt: 391  Z-score: 536.6  bits: 105.0 E(32554): 1.4e-23
Smith-Waterman score: 391; 44.2% identity (73.6% similar) in 129 aa overlap (1-129:1-125)

               10        20        30        40        50        60
pF1KB8 MACGLVASNLNLKPGECLRVRGEVAPDAKSFVLNLGKDSNNLCLHFNPRFNAHGDANTIV
       :.  : ..:...:::  :.. : .:  . .::.:::. ...: :::::::.     .:::
CCDS13 MTGELEVKNMDMKPGSTLKITGSIADGTDGFVINLGQGTDKLNLHFNPRFSE----STIV
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KB8 CNSKDGGAWGTEQREAVFPFQPGSVAEVCITFDQANLTVKLPDGYEFKFPNRLNLEAINY
       ::: ::. :: ::::  . :.::: ..  .::.. .. ::::::.:. :::::.   ..:
CCDS13 CNSLDGSNWGQEQREDHLCFSPGSEVKFTVTFESDKFKVKLPDGHELTFPNRLGHSHLSY
         60        70        80        90       100       110      

              130      
pF1KB8 MAADGDFKIKCVAFD 
       ... : :..       
CCDS13 LSVRGGFNMSSFKLKE
        120       130  

>>CCDS33012.1 LGALS7 gene_id:3963|Hs108|chr19             (136 aa)
 initn: 261 init1: 153 opt: 244  Z-score: 338.4  bits: 68.4 E(32554): 1.6e-12
Smith-Waterman score: 244; 35.5% identity (62.1% similar) in 124 aa overlap (12-132:14-133)

                 10        20        30           40        50     
pF1KB8   MACGLVASNLNLKPGECLRVRGEVAPDAKSFVLNL--GKDS-NNLCLHFNPRFNAHGD
                    ..::  ::.:: : :.:. : .::  :... ..  ::::::.    :
CCDS33 MSNVPHKSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRL----D
               10        20        30        40        50          

          60        70        80        90       100       110     
pF1KB8 ANTIVCNSKDGGAWGTEQREAVFPFQPGSVAEVCITFDQANLTVKLPDGYEFKFPNRLNL
       .. .: :::. :.:: :.:    ::: :.  :: :  .. .. . . :.   .: .:: :
CCDS33 TSEVVFNSKEQGSWGREERGPGVPFQRGQPFEVLIIASDDGFKAVVGDAQYHHFRHRLPL
         60        70        80        90       100       110      

         120       130     
pF1KB8 EAINYMAADGDFKIKCVAFD
         .  . . :: ..  :   
CCDS33 ARVRLVEVGGDVQLDSVRIF
        120       130      

>>CCDS42565.1 LGALS7B gene_id:653499|Hs108|chr19          (136 aa)
 initn: 261 init1: 153 opt: 244  Z-score: 338.4  bits: 68.4 E(32554): 1.6e-12
Smith-Waterman score: 244; 35.5% identity (62.1% similar) in 124 aa overlap (12-132:14-133)

                 10        20        30           40        50     
pF1KB8   MACGLVASNLNLKPGECLRVRGEVAPDAKSFVLNL--GKDS-NNLCLHFNPRFNAHGD
                    ..::  ::.:: : :.:. : .::  :... ..  ::::::.    :
CCDS42 MSNVPHKSSLPEGIRPGTVLRIRGLVPPNASRFHVNLLCGEEQGSDAALHFNPRL----D
               10        20        30        40        50          

          60        70        80        90       100       110     
pF1KB8 ANTIVCNSKDGGAWGTEQREAVFPFQPGSVAEVCITFDQANLTVKLPDGYEFKFPNRLNL
       .. .: :::. :.:: :.:    ::: :.  :: :  .. .. . . :.   .: .:: :
CCDS42 TSEVVFNSKEQGSWGREERGPGVPFQRGQPFEVLIIASDDGFKAVVGDAQYHHFRHRLPL
         60        70        80        90       100       110      

         120       130     
pF1KB8 EAINYMAADGDFKIKCVAFD
         .  . . :: ..  :   
CCDS42 ARVRLVEVGGDVQLDSVRIF
        120       130      

>>CCDS41956.1 LGALS3 gene_id:3958|Hs108|chr14             (250 aa)
 initn: 165 init1: 112 opt: 236  Z-score: 323.5  bits: 66.5 E(32554): 1.1e-11
Smith-Waterman score: 236; 29.6% identity (65.9% similar) in 135 aa overlap (5-134:115-247)

                                         10            20        30
pF1KB8                           MACGLVASNLNLKPGECLR----VRGEVAPDAKS
                                     .:  :: :  :   :    . : : :.:. 
CCDS41 GPGAYPSSGQPSATGAYPATGPYGAPAGPLIVPYNLPLPGGVVPRMLITILGTVKPNANR
           90       100       110       120       130       140    

               40        50        60        70        80        90
pF1KB8 FVLNLGKDSNNLCLHFNPRFNAHGDANTIVCNSKDGGAWGTEQREAVFPFQPGSVAEVCI
       ..:.. . .:.. .::::::: ...  .::::.:  . :: :.:..::::. :.  .. .
CCDS41 IALDFQR-GNDVAFHFNPRFN-ENNRRVIVCNTKLDNNWGREERQSVFPFESGKPFKIQV
          150        160        170       180       190       200  

              100       110        120       130       
pF1KB8 TFDQANLTVKLPDGYEFKFPNRLN-LEAINYMAADGDFKIKCVAFD  
         .  .. : . :.. ... .:.. :. :. .. .::. .  ...   
CCDS41 LVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI
            210       220       230       240       250




135 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 12:59:56 2016 done: Fri Nov  4 12:59:56 2016
 Total Scan time:  1.660 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]