Result of FASTA (omim) for
pF1KB8457
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8457, 391 aa
1>>>pF1KB8457 391 - 391 aa - 391 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 13.1688+/-0.000439; mu= -16.6143+/- 0.027
mean_var=553.5873+/-116.762, 0's: 0 Z-trim(124.5): 11 B-trim: 842 in 1/59
Lambda= 0.054511
statistics sampled from 46352 (46366) to 46352 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.544), width: 16
Scan time: 10.940
The best scores are: opt bits E(85289)
NP_689449 (OMIM: 606084) cdc42 effector protein 1 ( 391) 2702 226.6 8.3e-59
XP_016884030 (OMIM: 606084) PREDICTED: cdc42 effec ( 391) 2702 226.6 8.3e-59
XP_006724171 (OMIM: 606084) PREDICTED: cdc42 effec ( 391) 2702 226.6 8.3e-59
XP_006724170 (OMIM: 606084) PREDICTED: cdc42 effec ( 391) 2702 226.6 8.3e-59
XP_006724172 (OMIM: 606084) PREDICTED: cdc42 effec ( 391) 2702 226.6 8.3e-59
>>NP_689449 (OMIM: 606084) cdc42 effector protein 1 [Hom (391 aa)
initn: 2702 init1: 2702 opt: 2702 Z-score: 1176.8 bits: 226.6 E(85289): 8.3e-59
Smith-Waterman score: 2702; 100.0% identity (100.0% similar) in 391 aa overlap (1-391:1-391)
10 20 30 40 50 60
pF1KB8 MPGPQGGRGAATMSLGKLSPVGWVSSSQGKRRLTADMISHPLGDFRHTMHVGRGGDVFGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MPGPQGGRGAATMSLGKLSPVGWVSSSQGKRRLTADMISHPLGDFRHTMHVGRGGDVFGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TSFLSNHGGSSGSTHRSPRSFLAKKLQLVRRVGAPPRRMASPPAPSPAPPAISPIIKNAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 TSFLSNHGGSSGSTHRSPRSFLAKKLQLVRRVGAPPRRMASPPAPSPAPPAISPIIKNAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SLPQLNQAAYDSLVVGKLSFDSSPTSSTDGHSSYGLDSGFCTISRLPRSEKPHDRDRDGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 SLPQLNQAAYDSLVVGKLSFDSSPTSSTDGHSSYGLDSGFCTISRLPRSEKPHDRDRDGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FPSEPGLRRSDSLLSFRLDLDLGPSLLSELLGVMSLPEAPAAETPAPAANPPAPTANPTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 FPSEPGLRRSDSLLSFRLDLDLGPSLLSELLGVMSLPEAPAAETPAPAANPPAPTANPTG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 PAANPPATTANPPAPAANPSAPAATPTGPAANPPAPAASSTPHGHCPNGVTAGLGPVAEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 PAANPPATTANPPAPAANPSAPAATPTGPAANPPAPAASSTPHGHCPNGVTAGLGPVAEV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 KSSPVGGGPRGPAGPALGRHWGAGWDGGHHYPEMDARQERVEVLPQARASWESLDEEWRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 KSSPVGGGPRGPAGPALGRHWGAGWDGGHHYPEMDARQERVEVLPQARASWESLDEEWRA
310 320 330 340 350 360
370 380 390
pF1KB8 PQAGSRTPVPSTVQANTFEFADAEEDDEVKV
:::::::::::::::::::::::::::::::
NP_689 PQAGSRTPVPSTVQANTFEFADAEEDDEVKV
370 380 390
>>XP_016884030 (OMIM: 606084) PREDICTED: cdc42 effector (391 aa)
initn: 2702 init1: 2702 opt: 2702 Z-score: 1176.8 bits: 226.6 E(85289): 8.3e-59
Smith-Waterman score: 2702; 100.0% identity (100.0% similar) in 391 aa overlap (1-391:1-391)
10 20 30 40 50 60
pF1KB8 MPGPQGGRGAATMSLGKLSPVGWVSSSQGKRRLTADMISHPLGDFRHTMHVGRGGDVFGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPGPQGGRGAATMSLGKLSPVGWVSSSQGKRRLTADMISHPLGDFRHTMHVGRGGDVFGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TSFLSNHGGSSGSTHRSPRSFLAKKLQLVRRVGAPPRRMASPPAPSPAPPAISPIIKNAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TSFLSNHGGSSGSTHRSPRSFLAKKLQLVRRVGAPPRRMASPPAPSPAPPAISPIIKNAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SLPQLNQAAYDSLVVGKLSFDSSPTSSTDGHSSYGLDSGFCTISRLPRSEKPHDRDRDGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SLPQLNQAAYDSLVVGKLSFDSSPTSSTDGHSSYGLDSGFCTISRLPRSEKPHDRDRDGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FPSEPGLRRSDSLLSFRLDLDLGPSLLSELLGVMSLPEAPAAETPAPAANPPAPTANPTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FPSEPGLRRSDSLLSFRLDLDLGPSLLSELLGVMSLPEAPAAETPAPAANPPAPTANPTG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 PAANPPATTANPPAPAANPSAPAATPTGPAANPPAPAASSTPHGHCPNGVTAGLGPVAEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PAANPPATTANPPAPAANPSAPAATPTGPAANPPAPAASSTPHGHCPNGVTAGLGPVAEV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 KSSPVGGGPRGPAGPALGRHWGAGWDGGHHYPEMDARQERVEVLPQARASWESLDEEWRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KSSPVGGGPRGPAGPALGRHWGAGWDGGHHYPEMDARQERVEVLPQARASWESLDEEWRA
310 320 330 340 350 360
370 380 390
pF1KB8 PQAGSRTPVPSTVQANTFEFADAEEDDEVKV
:::::::::::::::::::::::::::::::
XP_016 PQAGSRTPVPSTVQANTFEFADAEEDDEVKV
370 380 390
>>XP_006724171 (OMIM: 606084) PREDICTED: cdc42 effector (391 aa)
initn: 2702 init1: 2702 opt: 2702 Z-score: 1176.8 bits: 226.6 E(85289): 8.3e-59
Smith-Waterman score: 2702; 100.0% identity (100.0% similar) in 391 aa overlap (1-391:1-391)
10 20 30 40 50 60
pF1KB8 MPGPQGGRGAATMSLGKLSPVGWVSSSQGKRRLTADMISHPLGDFRHTMHVGRGGDVFGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MPGPQGGRGAATMSLGKLSPVGWVSSSQGKRRLTADMISHPLGDFRHTMHVGRGGDVFGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TSFLSNHGGSSGSTHRSPRSFLAKKLQLVRRVGAPPRRMASPPAPSPAPPAISPIIKNAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TSFLSNHGGSSGSTHRSPRSFLAKKLQLVRRVGAPPRRMASPPAPSPAPPAISPIIKNAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SLPQLNQAAYDSLVVGKLSFDSSPTSSTDGHSSYGLDSGFCTISRLPRSEKPHDRDRDGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SLPQLNQAAYDSLVVGKLSFDSSPTSSTDGHSSYGLDSGFCTISRLPRSEKPHDRDRDGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FPSEPGLRRSDSLLSFRLDLDLGPSLLSELLGVMSLPEAPAAETPAPAANPPAPTANPTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FPSEPGLRRSDSLLSFRLDLDLGPSLLSELLGVMSLPEAPAAETPAPAANPPAPTANPTG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 PAANPPATTANPPAPAANPSAPAATPTGPAANPPAPAASSTPHGHCPNGVTAGLGPVAEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PAANPPATTANPPAPAANPSAPAATPTGPAANPPAPAASSTPHGHCPNGVTAGLGPVAEV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 KSSPVGGGPRGPAGPALGRHWGAGWDGGHHYPEMDARQERVEVLPQARASWESLDEEWRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KSSPVGGGPRGPAGPALGRHWGAGWDGGHHYPEMDARQERVEVLPQARASWESLDEEWRA
310 320 330 340 350 360
370 380 390
pF1KB8 PQAGSRTPVPSTVQANTFEFADAEEDDEVKV
:::::::::::::::::::::::::::::::
XP_006 PQAGSRTPVPSTVQANTFEFADAEEDDEVKV
370 380 390
>>XP_006724170 (OMIM: 606084) PREDICTED: cdc42 effector (391 aa)
initn: 2702 init1: 2702 opt: 2702 Z-score: 1176.8 bits: 226.6 E(85289): 8.3e-59
Smith-Waterman score: 2702; 100.0% identity (100.0% similar) in 391 aa overlap (1-391:1-391)
10 20 30 40 50 60
pF1KB8 MPGPQGGRGAATMSLGKLSPVGWVSSSQGKRRLTADMISHPLGDFRHTMHVGRGGDVFGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MPGPQGGRGAATMSLGKLSPVGWVSSSQGKRRLTADMISHPLGDFRHTMHVGRGGDVFGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TSFLSNHGGSSGSTHRSPRSFLAKKLQLVRRVGAPPRRMASPPAPSPAPPAISPIIKNAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TSFLSNHGGSSGSTHRSPRSFLAKKLQLVRRVGAPPRRMASPPAPSPAPPAISPIIKNAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SLPQLNQAAYDSLVVGKLSFDSSPTSSTDGHSSYGLDSGFCTISRLPRSEKPHDRDRDGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SLPQLNQAAYDSLVVGKLSFDSSPTSSTDGHSSYGLDSGFCTISRLPRSEKPHDRDRDGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FPSEPGLRRSDSLLSFRLDLDLGPSLLSELLGVMSLPEAPAAETPAPAANPPAPTANPTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FPSEPGLRRSDSLLSFRLDLDLGPSLLSELLGVMSLPEAPAAETPAPAANPPAPTANPTG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 PAANPPATTANPPAPAANPSAPAATPTGPAANPPAPAASSTPHGHCPNGVTAGLGPVAEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PAANPPATTANPPAPAANPSAPAATPTGPAANPPAPAASSTPHGHCPNGVTAGLGPVAEV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 KSSPVGGGPRGPAGPALGRHWGAGWDGGHHYPEMDARQERVEVLPQARASWESLDEEWRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KSSPVGGGPRGPAGPALGRHWGAGWDGGHHYPEMDARQERVEVLPQARASWESLDEEWRA
310 320 330 340 350 360
370 380 390
pF1KB8 PQAGSRTPVPSTVQANTFEFADAEEDDEVKV
:::::::::::::::::::::::::::::::
XP_006 PQAGSRTPVPSTVQANTFEFADAEEDDEVKV
370 380 390
>>XP_006724172 (OMIM: 606084) PREDICTED: cdc42 effector (391 aa)
initn: 2702 init1: 2702 opt: 2702 Z-score: 1176.8 bits: 226.6 E(85289): 8.3e-59
Smith-Waterman score: 2702; 100.0% identity (100.0% similar) in 391 aa overlap (1-391:1-391)
10 20 30 40 50 60
pF1KB8 MPGPQGGRGAATMSLGKLSPVGWVSSSQGKRRLTADMISHPLGDFRHTMHVGRGGDVFGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MPGPQGGRGAATMSLGKLSPVGWVSSSQGKRRLTADMISHPLGDFRHTMHVGRGGDVFGD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TSFLSNHGGSSGSTHRSPRSFLAKKLQLVRRVGAPPRRMASPPAPSPAPPAISPIIKNAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 TSFLSNHGGSSGSTHRSPRSFLAKKLQLVRRVGAPPRRMASPPAPSPAPPAISPIIKNAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SLPQLNQAAYDSLVVGKLSFDSSPTSSTDGHSSYGLDSGFCTISRLPRSEKPHDRDRDGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SLPQLNQAAYDSLVVGKLSFDSSPTSSTDGHSSYGLDSGFCTISRLPRSEKPHDRDRDGS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 FPSEPGLRRSDSLLSFRLDLDLGPSLLSELLGVMSLPEAPAAETPAPAANPPAPTANPTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 FPSEPGLRRSDSLLSFRLDLDLGPSLLSELLGVMSLPEAPAAETPAPAANPPAPTANPTG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 PAANPPATTANPPAPAANPSAPAATPTGPAANPPAPAASSTPHGHCPNGVTAGLGPVAEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PAANPPATTANPPAPAANPSAPAATPTGPAANPPAPAASSTPHGHCPNGVTAGLGPVAEV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 KSSPVGGGPRGPAGPALGRHWGAGWDGGHHYPEMDARQERVEVLPQARASWESLDEEWRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KSSPVGGGPRGPAGPALGRHWGAGWDGGHHYPEMDARQERVEVLPQARASWESLDEEWRA
310 320 330 340 350 360
370 380 390
pF1KB8 PQAGSRTPVPSTVQANTFEFADAEEDDEVKV
:::::::::::::::::::::::::::::::
XP_006 PQAGSRTPVPSTVQANTFEFADAEEDDEVKV
370 380 390
391 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 13:05:07 2016 done: Fri Nov 4 13:05:09 2016
Total Scan time: 10.940 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]