FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8458, 339 aa
  1>>>pF1KB8458 339 - 339 aa - 339 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8123+/-0.00103; mu= 13.7883+/- 0.062
 mean_var=99.9219+/-20.698, 0's: 0 Z-trim(106.1): 145  B-trim: 6 in 1/50
 Lambda= 0.128305
 statistics sampled from 8615 (8787) to 8615 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.27), width:  16
 Scan time:  2.720

The best scores are:                                      opt bits E(32554)
CCDS13934.1 NCF4 gene_id:4689|Hs108|chr22          ( 339) 2221 421.8 3.9e-118
CCDS13935.1 NCF4 gene_id:4689|Hs108|chr22          ( 348) 1673 320.4 1.4e-87


>>CCDS13934.1 NCF4 gene_id:4689|Hs108|chr22               (339 aa)
 initn: 2221 init1: 2221 opt: 2221  Z-score: 2234.4  bits: 421.8 E(32554): 3.9e-118
Smith-Waterman score: 2221; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)

               10        20        30        40        50        60
pF1KB8 MAVAQQLRAESDFEQLPDDVAISANIADIEEKRGFTSHFVFVIEVKTKGGSKYLIYRRYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAVAQQLRAESDFEQLPDDVAISANIADIEEKRGFTSHFVFVIEVKTKGGSKYLIYRRYR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QFHALQSKLEERFGPDSKSSALACTLPTLPAKVYVGVKQEIAEMRIPALNAYMKSLLSLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QFHALQSKLEERFGPDSKSSALACTLPTLPAKVYVGVKQEIAEMRIPALNAYMKSLLSLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VWVLMDEDVRIFFYQSPYDSEQVPQALRRLRPRTRKVKSVSPQGNSVDRMAAPRAEALFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VWVLMDEDVRIFFYQSPYDSEQVPQALRRLRPRTRKVKSVSPQGNSVDRMAAPRAEALFD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEEDDPTNWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEEDDPTNWL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 RCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSD
              250       260       270       280       290       300

              310       320       330         
pF1KB8 EDVALMVRQARGLPSQKRLFPWKLHITQKDNYRVYNTMP
       :::::::::::::::::::::::::::::::::::::::
CCDS13 EDVALMVRQARGLPSQKRLFPWKLHITQKDNYRVYNTMP
              310       320       330         

>>CCDS13935.1 NCF4 gene_id:4689|Hs108|chr22               (348 aa)
 initn: 1673 init1: 1673 opt: 1673  Z-score: 1686.0  bits: 320.4 E(32554): 1.4e-87
Smith-Waterman score: 1673; 98.8% identity (99.6% similar) in 258 aa overlap (1-258:1-258)

               10        20        30        40        50        60
pF1KB8 MAVAQQLRAESDFEQLPDDVAISANIADIEEKRGFTSHFVFVIEVKTKGGSKYLIYRRYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAVAQQLRAESDFEQLPDDVAISANIADIEEKRGFTSHFVFVIEVKTKGGSKYLIYRRYR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 QFHALQSKLEERFGPDSKSSALACTLPTLPAKVYVGVKQEIAEMRIPALNAYMKSLLSLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QFHALQSKLEERFGPDSKSSALACTLPTLPAKVYVGVKQEIAEMRIPALNAYMKSLLSLP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 VWVLMDEDVRIFFYQSPYDSEQVPQALRRLRPRTRKVKSVSPQGNSVDRMAAPRAEALFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VWVLMDEDVRIFFYQSPYDSEQVPQALRRLRPRTRKVKSVSPQGNSVDRMAAPRAEALFD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEEDDPTNWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEEDDPTNWL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 RCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSD
       :::::::::::::..: :                                          
CCDS13 RCYYYEDTISTIKSVAWEGGACPAFLPSLRPLPLTSPSHGSLSHSKAPSGSQMSHNAVTS
              250       260       270       280       290       300




339 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:05:47 2016 done: Fri Nov  4 13:05:47 2016
 Total Scan time:  2.720 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]