FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8460, 252 aa
  1>>>pF1KB8460 252 - 252 aa - 252 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3272+/-0.00063; mu= 16.3765+/- 0.038
 mean_var=79.9103+/-15.985, 0's: 0 Z-trim(112.9): 6  B-trim: 0 in 0/50
 Lambda= 0.143474
 statistics sampled from 13572 (13576) to 13572 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.417), width:  16
 Scan time:  2.610

The best scores are:                                      opt bits E(32554)
CCDS13873.1 OSM gene_id:5008|Hs108|chr22           ( 252) 1693 359.0 1.8e-99
CCDS82706.1 OSM gene_id:5008|Hs108|chr22           ( 231) 1571 333.7 6.6e-92


>>CCDS13873.1 OSM gene_id:5008|Hs108|chr22                (252 aa)
 initn: 1693 init1: 1693 opt: 1693  Z-score: 1899.4  bits: 359.0 E(32554): 1.8e-99
Smith-Waterman score: 1693; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252)

               10        20        30        40        50        60
pF1KB8 MGVLLTQRTLLSLVLALLFPSMASMAAIGSCSKEYRVLLGQLQKQTDLMQDTSRLLDPYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MGVLLTQRTLLSLVLALLFPSMASMAAIGSCSKEYRVLLGQLQKQTDLMQDTSRLLDPYI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RIQGLDVPKLREHCRERPGAFPSEETLRGLGRRGFLQTLNATLGCVLHRLADLEQRLPKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RIQGLDVPKLREHCRERPGAFPSEETLRGLGRRGFLQTLNATLGCVLHRLADLEQRLPKA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 QDLERSGLNIEDLEKLQMARPNILGLRNNIYCMAQLLDNSDTAEPTKAGRGASQPPTPTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QDLERSGLNIEDLEKLQMARPNILGLRNNIYCMAQLLDNSDTAEPTKAGRGASQPPTPTP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 ASDAFQRKLEGCRFLHGYHRFMHSVGRVFSKWGESPNRSRRHSPHQALRKGVRRTRPSRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ASDAFQRKLEGCRFLHGYHRFMHSVGRVFSKWGESPNRSRRHSPHQALRKGVRRTRPSRK
              190       200       210       220       230       240

              250  
pF1KB8 GKRLMTRGQLPR
       ::::::::::::
CCDS13 GKRLMTRGQLPR
              250  

>>CCDS82706.1 OSM gene_id:5008|Hs108|chr22                (231 aa)
 initn: 1571 init1: 1571 opt: 1571  Z-score: 1763.5  bits: 333.7 E(32554): 6.6e-92
Smith-Waterman score: 1571; 100.0% identity (100.0% similar) in 231 aa overlap (22-252:1-231)

               10        20        30        40        50        60
pF1KB8 MGVLLTQRTLLSLVLALLFPSMASMAAIGSCSKEYRVLLGQLQKQTDLMQDTSRLLDPYI
                            :::::::::::::::::::::::::::::::::::::::
CCDS82                      MASMAAIGSCSKEYRVLLGQLQKQTDLMQDTSRLLDPYI
                                    10        20        30         

               70        80        90       100       110       120
pF1KB8 RIQGLDVPKLREHCRERPGAFPSEETLRGLGRRGFLQTLNATLGCVLHRLADLEQRLPKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 RIQGLDVPKLREHCRERPGAFPSEETLRGLGRRGFLQTLNATLGCVLHRLADLEQRLPKA
      40        50        60        70        80        90         

              130       140       150       160       170       180
pF1KB8 QDLERSGLNIEDLEKLQMARPNILGLRNNIYCMAQLLDNSDTAEPTKAGRGASQPPTPTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 QDLERSGLNIEDLEKLQMARPNILGLRNNIYCMAQLLDNSDTAEPTKAGRGASQPPTPTP
     100       110       120       130       140       150         

              190       200       210       220       230       240
pF1KB8 ASDAFQRKLEGCRFLHGYHRFMHSVGRVFSKWGESPNRSRRHSPHQALRKGVRRTRPSRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ASDAFQRKLEGCRFLHGYHRFMHSVGRVFSKWGESPNRSRRHSPHQALRKGVRRTRPSRK
     160       170       180       190       200       210         

              250  
pF1KB8 GKRLMTRGQLPR
       ::::::::::::
CCDS82 GKRLMTRGQLPR
     220       230 




252 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:07:37 2016 done: Fri Nov  4 13:07:37 2016
 Total Scan time:  2.610 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]