FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8460, 252 aa
  1>>>pF1KB8460 252 - 252 aa - 252 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2558+/-0.000278; mu= 16.8143+/- 0.017
 mean_var=84.0694+/-17.126, 0's: 0 Z-trim(120.1): 9  B-trim: 0 in 0/55
 Lambda= 0.139880
 statistics sampled from 34825 (34834) to 34825 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.761), E-opt: 0.2 (0.408), width:  16
 Scan time:  7.680

The best scores are:                                      opt bits E(85289)
NP_065391 (OMIM: 165095) oncostatin-M isoform 1 pr ( 252) 1693 350.5 1.7e-96
NP_001306037 (OMIM: 165095) oncostatin-M isoform 2 ( 231) 1571 325.8 4.1e-89


>>NP_065391 (OMIM: 165095) oncostatin-M isoform 1 prepro  (252 aa)
 initn: 1693 init1: 1693 opt: 1693  Z-score: 1853.4  bits: 350.5 E(85289): 1.7e-96
Smith-Waterman score: 1693; 100.0% identity (100.0% similar) in 252 aa overlap (1-252:1-252)

               10        20        30        40        50        60
pF1KB8 MGVLLTQRTLLSLVLALLFPSMASMAAIGSCSKEYRVLLGQLQKQTDLMQDTSRLLDPYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 MGVLLTQRTLLSLVLALLFPSMASMAAIGSCSKEYRVLLGQLQKQTDLMQDTSRLLDPYI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RIQGLDVPKLREHCRERPGAFPSEETLRGLGRRGFLQTLNATLGCVLHRLADLEQRLPKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 RIQGLDVPKLREHCRERPGAFPSEETLRGLGRRGFLQTLNATLGCVLHRLADLEQRLPKA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 QDLERSGLNIEDLEKLQMARPNILGLRNNIYCMAQLLDNSDTAEPTKAGRGASQPPTPTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 QDLERSGLNIEDLEKLQMARPNILGLRNNIYCMAQLLDNSDTAEPTKAGRGASQPPTPTP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 ASDAFQRKLEGCRFLHGYHRFMHSVGRVFSKWGESPNRSRRHSPHQALRKGVRRTRPSRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_065 ASDAFQRKLEGCRFLHGYHRFMHSVGRVFSKWGESPNRSRRHSPHQALRKGVRRTRPSRK
              190       200       210       220       230       240

              250  
pF1KB8 GKRLMTRGQLPR
       ::::::::::::
NP_065 GKRLMTRGQLPR
              250  

>>NP_001306037 (OMIM: 165095) oncostatin-M isoform 2 [Ho  (231 aa)
 initn: 1571 init1: 1571 opt: 1571  Z-score: 1720.8  bits: 325.8 E(85289): 4.1e-89
Smith-Waterman score: 1571; 100.0% identity (100.0% similar) in 231 aa overlap (22-252:1-231)

               10        20        30        40        50        60
pF1KB8 MGVLLTQRTLLSLVLALLFPSMASMAAIGSCSKEYRVLLGQLQKQTDLMQDTSRLLDPYI
                            :::::::::::::::::::::::::::::::::::::::
NP_001                      MASMAAIGSCSKEYRVLLGQLQKQTDLMQDTSRLLDPYI
                                    10        20        30         

               70        80        90       100       110       120
pF1KB8 RIQGLDVPKLREHCRERPGAFPSEETLRGLGRRGFLQTLNATLGCVLHRLADLEQRLPKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RIQGLDVPKLREHCRERPGAFPSEETLRGLGRRGFLQTLNATLGCVLHRLADLEQRLPKA
      40        50        60        70        80        90         

              130       140       150       160       170       180
pF1KB8 QDLERSGLNIEDLEKLQMARPNILGLRNNIYCMAQLLDNSDTAEPTKAGRGASQPPTPTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDLERSGLNIEDLEKLQMARPNILGLRNNIYCMAQLLDNSDTAEPTKAGRGASQPPTPTP
     100       110       120       130       140       150         

              190       200       210       220       230       240
pF1KB8 ASDAFQRKLEGCRFLHGYHRFMHSVGRVFSKWGESPNRSRRHSPHQALRKGVRRTRPSRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ASDAFQRKLEGCRFLHGYHRFMHSVGRVFSKWGESPNRSRRHSPHQALRKGVRRTRPSRK
     160       170       180       190       200       210         

              250  
pF1KB8 GKRLMTRGQLPR
       ::::::::::::
NP_001 GKRLMTRGQLPR
     220       230 




252 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:07:37 2016 done: Fri Nov  4 13:07:39 2016
 Total Scan time:  7.680 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]