FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8464, 793 aa
  1>>>pF1KB8464 793 - 793 aa - 793 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.8662+/-0.0012; mu= -4.6029+/- 0.073
 mean_var=527.1034+/-106.761, 0's: 0 Z-trim(116.3): 53  B-trim: 0 in 0/53
 Lambda= 0.055863
 statistics sampled from 16887 (16932) to 16887 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.52), width:  16
 Scan time:  5.290

The best scores are:                                      opt bits E(32554)
CCDS13875.1 SF3A1 gene_id:10291|Hs108|chr22        ( 793) 5403 450.5 5.1e-126


>>CCDS13875.1 SF3A1 gene_id:10291|Hs108|chr22             (793 aa)
 initn: 5403 init1: 5403 opt: 5403  Z-score: 2376.0  bits: 450.5 E(32554): 5.1e-126
Smith-Waterman score: 5403; 100.0% identity (100.0% similar) in 793 aa overlap (1-793:1-793)

               10        20        30        40        50        60
pF1KB8 MPAGPVQAVPPPPPVPTEPKQPTEEEASSKEDSAPSKPVVGIIYPPPEVRNIVDKTASFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MPAGPVQAVPPPPPVPTEPKQPTEEEASSKEDSAPSKPVVGIIYPPPEVRNIVDKTASFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 QQTTQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QQTTQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFSKLKKEAENPREVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFSKLKKEAENPREVL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 DQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 PEELGARILIQERYEKFGESEEVEMEVESDEEDDKQEKAEEPPSQLDQDTQVQDMDEGSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PEELGARILIQERYEKFGESEEVEMEVESDEEDDKQEKAEEPPSQLDQDTQVQDMDEGSD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 DEEEGQKVPPPPETPMPPPLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DEEEGQKVPPPPETPMPPPLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 PASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 ETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDD
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 TKEKIGPSKPNEIPQQPPPPSSATNIPSSAPPITSVPRPPTMPPPVRTTVVSAVPVMPRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TKEKIGPSKPNEIPQQPPPPSSATNIPSSAPPITSVPRPPTMPPPVRTTVVSAVPVMPRP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 PMASVVRLPPGSVIAPMPPIIHAPRINVVPMPPSAPPIMAPRPPPMIVPTAFVPAPPVAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PMASVVRLPPGSVIAPMPPIIHAPRINVVPMPPSAPPIMAPRPPPMIVPTAFVPAPPVAP
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB8 VPAPAPMPPVHPPPPMEDEPTSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPNMQDKTEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VPAPAPMPPVHPPPPMEDEPTSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPNMQDKTEW
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB8 KLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAV
              730       740       750       760       770       780

              790   
pF1KB8 IHLALKERGGRKK
       :::::::::::::
CCDS13 IHLALKERGGRKK
              790   




793 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:09:57 2016 done: Fri Nov  4 13:09:58 2016
 Total Scan time:  5.290 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]