FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8464, 793 aa
  1>>>pF1KB8464 793 - 793 aa - 793 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 14.1701+/-0.000467; mu= -18.3768+/- 0.029
 mean_var=608.9781+/-125.272, 0's: 0 Z-trim(124.6): 54  B-trim: 928 in 1/60
 Lambda= 0.051972
 statistics sampled from 46486 (46557) to 46486 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.546), width:  16
 Scan time: 16.340

The best scores are:                                      opt bits E(85289)
NP_005868 (OMIM: 605595) splicing factor 3A subuni ( 793) 5403 420.4 1.5e-116


>>NP_005868 (OMIM: 605595) splicing factor 3A subunit 1   (793 aa)
 initn: 5403 init1: 5403 opt: 5403  Z-score: 2213.3  bits: 420.4 E(85289): 1.5e-116
Smith-Waterman score: 5403; 100.0% identity (100.0% similar) in 793 aa overlap (1-793:1-793)

               10        20        30        40        50        60
pF1KB8 MPAGPVQAVPPPPPVPTEPKQPTEEEASSKEDSAPSKPVVGIIYPPPEVRNIVDKTASFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MPAGPVQAVPPPPPVPTEPKQPTEEEASSKEDSAPSKPVVGIIYPPPEVRNIVDKTASFV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ARNGPEFEARIRQNEINNPKFNFLNPNDPYHAYYRHKVSEFKEGKAQEPSAAIPKVMQQQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 QQTTQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QQTTQQQLPQKVQAQVIQETIVPKEPPPEFEFIADPPSISAFDLDVVKLTAQFVARNGRQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFSKLKKEAENPREVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 FLTQLMQKEQRNYQFDFLRPQHSLFNYFTKLVEQYTKILIPPKGLFSKLKKEAENPREVL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 DQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DQVCYRVEWAKFQERERKKEEEEKEKERVAYAQIDWHDFVVVETVDFQPNEQGNFPPPTT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 PEELGARILIQERYEKFGESEEVEMEVESDEEDDKQEKAEEPPSQLDQDTQVQDMDEGSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PEELGARILIQERYEKFGESEEVEMEVESDEEDDKQEKAEEPPSQLDQDTQVQDMDEGSD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 DEEEGQKVPPPPETPMPPPLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DEEEGQKVPPPPETPMPPPLPPTPDQVIVRKDYDPKASKPLPPAPAPDEYLVSPITGEKI
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 PASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PASKMQEHMRIGLLDPRWLEQRDRSIREKQSDDEVYAPGLDIESSLKQLAERRTDIFGVE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 ETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 ETAIGKKIGEEEIQKPEEKVTWDGHSGSMARTQQAAQANITLQEQIEAIHKAKGLVPEDD
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 TKEKIGPSKPNEIPQQPPPPSSATNIPSSAPPITSVPRPPTMPPPVRTTVVSAVPVMPRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TKEKIGPSKPNEIPQQPPPPSSATNIPSSAPPITSVPRPPTMPPPVRTTVVSAVPVMPRP
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 PMASVVRLPPGSVIAPMPPIIHAPRINVVPMPPSAPPIMAPRPPPMIVPTAFVPAPPVAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PMASVVRLPPGSVIAPMPPIIHAPRINVVPMPPSAPPIMAPRPPPMIVPTAFVPAPPVAP
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB8 VPAPAPMPPVHPPPPMEDEPTSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPNMQDKTEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VPAPAPMPPVHPPPPMEDEPTSKKLKTEDSLMPEEEFLRRNKGPVSIKVQVPNMQDKTEW
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB8 KLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 KLNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAV
              730       740       750       760       770       780

              790   
pF1KB8 IHLALKERGGRKK
       :::::::::::::
NP_005 IHLALKERGGRKK
              790   




793 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:09:58 2016 done: Fri Nov  4 13:10:00 2016
 Total Scan time: 16.340 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]