FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8465, 126 aa
  1>>>pF1KB8465 126 - 126 aa - 126 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2868+/-0.00082; mu= 11.0572+/- 0.049
 mean_var=63.8161+/-12.748, 0's: 0 Z-trim(107.0): 18  B-trim: 117 in 1/49
 Lambda= 0.160550
 statistics sampled from 9301 (9312) to 9301 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.286), width:  16
 Scan time:  1.350

The best scores are:                                      opt bits E(32554)
CCDS13828.1 SNRPD3 gene_id:6634|Hs108|chr22        ( 126)  823 198.7 7.7e-52


>>CCDS13828.1 SNRPD3 gene_id:6634|Hs108|chr22             (126 aa)
 initn: 823 init1: 823 opt: 823  Z-score: 1044.1  bits: 198.7 E(32554): 7.7e-52
Smith-Waterman score: 823; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126)

               10        20        30        40        50        60
pF1KB8 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAARGRGRGMGRGN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAARGRGRGMGRGN
               70        80        90       100       110       120

             
pF1KB8 IFQKRR
       ::::::
CCDS13 IFQKRR
             




126 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:10:39 2016 done: Fri Nov  4 13:10:39 2016
 Total Scan time:  1.350 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]