FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8465, 126 aa 1>>>pF1KB8465 126 - 126 aa - 126 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1742+/-0.000363; mu= 11.7364+/- 0.023 mean_var=65.2845+/-13.217, 0's: 0 Z-trim(113.7): 14 B-trim: 393 in 1/51 Lambda= 0.158734 statistics sampled from 23095 (23103) to 23095 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.271), width: 16 Scan time: 3.770 The best scores are: opt bits E(85289) NP_004166 (OMIM: 601062) small nuclear ribonucleop ( 126) 823 196.7 8.2e-51 NP_001265585 (OMIM: 601062) small nuclear ribonucl ( 126) 823 196.7 8.2e-51 NP_036453 (OMIM: 607284) U6 snRNA-associated Sm-li ( 139) 216 57.7 6.2e-09 NP_008869 (OMIM: 601063) small nuclear ribonucleop ( 119) 195 52.9 1.5e-07 NP_001239058 (OMIM: 607284) U6 snRNA-associated Sm ( 125) 185 50.6 7.8e-07 >>NP_004166 (OMIM: 601062) small nuclear ribonucleoprote (126 aa) initn: 823 init1: 823 opt: 823 Z-score: 1033.3 bits: 196.7 E(85289): 8.2e-51 Smith-Waterman score: 823; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126) 10 20 30 40 50 60 pF1KB8 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAARGRGRGMGRGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAARGRGRGMGRGN 70 80 90 100 110 120 pF1KB8 IFQKRR :::::: NP_004 IFQKRR >>NP_001265585 (OMIM: 601062) small nuclear ribonucleopr (126 aa) initn: 823 init1: 823 opt: 823 Z-score: 1033.3 bits: 196.7 E(85289): 8.2e-51 Smith-Waterman score: 823; 100.0% identity (100.0% similar) in 126 aa overlap (1-126:1-126) 10 20 30 40 50 60 pF1KB8 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAARGRGRGMGRGN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAARGRGRGMGRGN 70 80 90 100 110 120 pF1KB8 IFQKRR :::::: NP_001 IFQKRR >>NP_036453 (OMIM: 607284) U6 snRNA-associated Sm-like p (139 aa) initn: 241 init1: 114 opt: 216 Z-score: 281.4 bits: 57.7 E(85289): 6.2e-09 Smith-Waterman score: 216; 33.3% identity (62.6% similar) in 123 aa overlap (5-125:2-115) 10 20 30 40 50 pF1KB8 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLE .:...:. :..: . : ..::.: :.:. .. :: .. .. : ::: . .. NP_036 MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMP 10 20 30 40 50 60 70 80 90 100 110 pF1KB8 QVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAARGRGRG-MGR . ::::: :..: .:: .. .:.. ..: ::: :. : .::: : :: NP_036 ECYIRGSTIKYLRIPD-----EIIDMVKEEVVAKGRGRGG---LQQQKQQKGRGMGGAGR 60 70 80 90 100 120 pF1KB8 GNIFQKRR : .: : NP_036 G-VFGGRGRGGIPGTGRGQPEKKPGRQAGKQ 110 120 130 >>NP_008869 (OMIM: 601063) small nuclear ribonucleoprote (119 aa) initn: 191 init1: 128 opt: 195 Z-score: 256.4 bits: 52.9 E(85289): 1.5e-07 Smith-Waterman score: 195; 32.5% identity (63.2% similar) in 117 aa overlap (7-119:4-115) 10 20 30 40 50 60 pF1KB8 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQ .. : . . :: : ..: .: . .. .:: ... . .: .. . .::: NP_008 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLET 10 20 30 40 50 70 80 90 100 110 pF1KB8 VYIRGSKIRFLILPDMLKNAPML----KSMKNKNQGSGAGRGKAAILKAQVAARGRGRGM . :::..::..:::: : .: ..:.:.. . ::::. .. .:::::: NP_008 LSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGR-----GRGRGRGRGRGR 60 70 80 90 100 110 120 pF1KB8 GRGNIFQKRR ::: NP_008 GRGGPRR >>NP_001239058 (OMIM: 607284) U6 snRNA-associated Sm-lik (125 aa) initn: 210 init1: 83 opt: 185 Z-score: 243.7 bits: 50.6 E(85289): 7.8e-07 Smith-Waterman score: 185; 34.6% identity (60.7% similar) in 107 aa overlap (21-125:4-101) 10 20 30 40 50 pF1KB8 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG-RVAQLE : ..::.: :.:. .. :: .. .. : ::: . .. NP_001 MLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMP 10 20 30 40 60 70 80 90 100 110 pF1KB8 QVYIRGSKIRFLILPDMLKNAPMLKSMKNKNQGSGAGRGKAAILKAQVAARGRGRG-MGR . ::::: :..: .:: .. .:.. ..: ::: :. : .::: : :: NP_001 ECYIRGSTIKYLRIPD-----EIIDMVKEEVVAKGRGRGG---LQQQKQQKGRGMGGAGR 50 60 70 80 90 120 pF1KB8 GNIFQKRR : .: : NP_001 G-VFGGRGRGGIPGTGRGQPEKKPGRQAGKQ 100 110 120 126 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 13:10:39 2016 done: Fri Nov 4 13:10:40 2016 Total Scan time: 3.770 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]