Result of FASTA (ccds) for
pF1KB8507
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8507, 941 aa
1>>>pF1KB8507 941 - 941 aa - 941 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3766+/-0.00118; mu= 16.4511+/- 0.070
mean_var=107.1510+/-21.845, 0's: 0 Z-trim(105.6): 47 B-trim: 534 in 1/50
Lambda= 0.123901
statistics sampled from 8478 (8504) to 8478 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.261), width: 16
Scan time: 4.350
The best scores are: opt bits E(32554)
CCDS73404.1 VPS11 gene_id:55823|Hs108|chr11 ( 941) 6338 1144.7 0
CCDS76485.1 VPS11 gene_id:55823|Hs108|chr11 ( 931) 5904 1067.1 0
>>CCDS73404.1 VPS11 gene_id:55823|Hs108|chr11 (941 aa)
initn: 6338 init1: 6338 opt: 6338 Z-score: 6125.3 bits: 1144.7 E(32554): 0
Smith-Waterman score: 6338; 99.9% identity (100.0% similar) in 941 aa overlap (1-941:1-941)
10 20 30 40 50 60
pF1KB8 MAAYLQWRRFVFFDKELVKEPLSNDGAAPGATPASGSAASKFLCLPPGITVCDSGRGSLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAAYLQWRRFVFFDKELVKEPLSNDGAAPGATPASGSAASKFLCLPPGITVCDSGRGSLV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 FGDMEGQIWFLPRSLQLTGFQAYKLRVTHLYQLKQHNILASVGEDEEGINPLVKIWNLEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 FGDMEGQIWFLPRSLQLTGFQAYKLRVTHLYQLKQHNILASVGEDEEGINPLVKIWNLEK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RDGGNPLCTRIFPAIPGTEPTVVSCLTVHENLNFMAIGFTDGSVTLNKGDITRDRHSKTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RDGGNPLCTRIFPAIPGTEPTVVSCLTVHENLNFMAIGFTDGSVTLNKGDITRDRHSKTQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 ILHKGNYPVTGLAFRQAGKTTHLFVVTTENVQSYIVSGKDYPRVELDTHGCGLRCSALSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ILHKGNYPVTGLAFRQAGKTTHLFVVTTENVQSYIVSGKDYPRVELDTHGCGLRCSALSD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 PSQDLQFIVAGDECVYLYQPDERGPCFAFEGHKLIAHWFRGYLIIVSRDRKVSPKSEFTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PSQDLQFIVAGDECVYLYQPDERGPCFAFEGHKLIAHWFRGYLIIVSRDRKVSPKSEFTS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 RDSQSSDKQILNIYDLCNKFIAYSTVFEDVVDVLAEWGSLYVLTRDGRVHALQEKDTQTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 RDSQSSDKQILNIYDLCNKFIAYSTVFEDVVDVLAEWGSLYVLTRDGRVHALQEKDTQTK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 LEMLFKKNLFEMAINLAKSQHLDSDGLAQIFMQYGDHLYSKGNHDGAVQQYIRTIGKLEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LEMLFKKNLFEMAINLAKSQHLDSDGLAQIFMQYGDHLYSKGNHDGAVQQYIRTIGKLEP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 SYVIRKFLDAQRIHNLTAYLQTLHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKKKSES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SYVIRKFLDAQRIHNLTAYLQTLHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKKKSES
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 EVHFDVETAIKVLRQAGYYSHALYLAENHAHHEWYLKIQLEDIKNYQEALRYIGKLPFEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EVHFDVETAIKVLRQAGYYSHALYLAENHAHHEWYLKIQLEDIKNYQEALRYIGKLPFEQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 AESNMKRYGKILMHHIPEQTTQLLKGLCTDYRPSLEGRSDREAPGCRANSEEFIPIFANN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 AESNMKRYGKILMHHIPEQTTQLLKGLCTDYRPSLEGRSDREAPGCRANSEEFIPIFANN
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 PRELKAFLEHMSEVQPDSPQGIYDTLLELRLQNWAHEKDPQVKEKLHAEAISLLKSGRFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PRELKAFLEHMSEVQPDSPQGIYDTLLELRLQNWAHEKDPQVKEKLHAEAISLLKSGRFC
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB8 DVFDKALVLCQMHDFQDGVLYLYEQGKLFQQIMHYHMQHEQYRQVISVCERHGEQDPSLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 DVFDKALVLCQMHDFQDGVLYLYEQGKLFQQIMHYHMQHEQYRQVISVCERHGEQDPSLW
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB8 EQALSYFARKEEDCKEYVAAVLKHIENKNLMPPLLVVQTLAHNSTATLSVIRDYLVQKLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EQALSYFARKEEDCKEYVAAVLKHIENKNLMPPLLVVQTLAHNSTATLSVIRDYLVQKLQ
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB8 KQSQQIAQDELRVRRYREETTRIRQEIQELKASPKIFQKTKCSICNSALELPSVHFLCGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KQSQQIAQDELRVRRYREETTRIRQEIQELKASPKIFQKTKCSICNSALELPSVHFLCGH
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB8 SFHQHCFESYSESDADCPTCLPENRKVMDMIRAQEQKRDLHDQFQHQLRCSNDSFSVIAD
::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
CCDS73 SFHQHCFESYSESDADCPTCLPENRKVMDMIRAQEQKRDLHDQFQHQLKCSNDSFSVIAD
850 860 870 880 890 900
910 920 930 940
pF1KB8 YFGRGVFNKLTLLTDPPTARLTSSLEAGLQRDLLMHSRRGT
:::::::::::::::::::::::::::::::::::::::::
CCDS73 YFGRGVFNKLTLLTDPPTARLTSSLEAGLQRDLLMHSRRGT
910 920 930 940
>>CCDS76485.1 VPS11 gene_id:55823|Hs108|chr11 (931 aa)
initn: 5904 init1: 5904 opt: 5904 Z-score: 5706.0 bits: 1067.1 E(32554): 0
Smith-Waterman score: 5904; 99.9% identity (100.0% similar) in 878 aa overlap (64-941:54-931)
40 50 60 70 80 90
pF1KB8 ASGSAASKFLCLPPGITVCDSGRGSLVFGDMEGQIWFLPRSLQLTGFQAYKLRVTHLYQL
::::::::::::::::::::::::::::::
CCDS76 LWSTGRKKEVHLLTCYQLSNPGRLLDYPAHMEGQIWFLPRSLQLTGFQAYKLRVTHLYQL
30 40 50 60 70 80
100 110 120 130 140 150
pF1KB8 KQHNILASVGEDEEGINPLVKIWNLEKRDGGNPLCTRIFPAIPGTEPTVVSCLTVHENLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KQHNILASVGEDEEGINPLVKIWNLEKRDGGNPLCTRIFPAIPGTEPTVVSCLTVHENLN
90 100 110 120 130 140
160 170 180 190 200 210
pF1KB8 FMAIGFTDGSVTLNKGDITRDRHSKTQILHKGNYPVTGLAFRQAGKTTHLFVVTTENVQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FMAIGFTDGSVTLNKGDITRDRHSKTQILHKGNYPVTGLAFRQAGKTTHLFVVTTENVQS
150 160 170 180 190 200
220 230 240 250 260 270
pF1KB8 YIVSGKDYPRVELDTHGCGLRCSALSDPSQDLQFIVAGDECVYLYQPDERGPCFAFEGHK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 YIVSGKDYPRVELDTHGCGLRCSALSDPSQDLQFIVAGDECVYLYQPDERGPCFAFEGHK
210 220 230 240 250 260
280 290 300 310 320 330
pF1KB8 LIAHWFRGYLIIVSRDRKVSPKSEFTSRDSQSSDKQILNIYDLCNKFIAYSTVFEDVVDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LIAHWFRGYLIIVSRDRKVSPKSEFTSRDSQSSDKQILNIYDLCNKFIAYSTVFEDVVDV
270 280 290 300 310 320
340 350 360 370 380 390
pF1KB8 LAEWGSLYVLTRDGRVHALQEKDTQTKLEMLFKKNLFEMAINLAKSQHLDSDGLAQIFMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LAEWGSLYVLTRDGRVHALQEKDTQTKLEMLFKKNLFEMAINLAKSQHLDSDGLAQIFMQ
330 340 350 360 370 380
400 410 420 430 440 450
pF1KB8 YGDHLYSKGNHDGAVQQYIRTIGKLEPSYVIRKFLDAQRIHNLTAYLQTLHRQSLANADH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 YGDHLYSKGNHDGAVQQYIRTIGKLEPSYVIRKFLDAQRIHNLTAYLQTLHRQSLANADH
390 400 410 420 430 440
460 470 480 490 500 510
pF1KB8 TTLLLNCYTKLKDSSKLEEFIKKKSESEVHFDVETAIKVLRQAGYYSHALYLAENHAHHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 TTLLLNCYTKLKDSSKLEEFIKKKSESEVHFDVETAIKVLRQAGYYSHALYLAENHAHHE
450 460 470 480 490 500
520 530 540 550 560 570
pF1KB8 WYLKIQLEDIKNYQEALRYIGKLPFEQAESNMKRYGKILMHHIPEQTTQLLKGLCTDYRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 WYLKIQLEDIKNYQEALRYIGKLPFEQAESNMKRYGKILMHHIPEQTTQLLKGLCTDYRP
510 520 530 540 550 560
580 590 600 610 620 630
pF1KB8 SLEGRSDREAPGCRANSEEFIPIFANNPRELKAFLEHMSEVQPDSPQGIYDTLLELRLQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SLEGRSDREAPGCRANSEEFIPIFANNPRELKAFLEHMSEVQPDSPQGIYDTLLELRLQN
570 580 590 600 610 620
640 650 660 670 680 690
pF1KB8 WAHEKDPQVKEKLHAEAISLLKSGRFCDVFDKALVLCQMHDFQDGVLYLYEQGKLFQQIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 WAHEKDPQVKEKLHAEAISLLKSGRFCDVFDKALVLCQMHDFQDGVLYLYEQGKLFQQIM
630 640 650 660 670 680
700 710 720 730 740 750
pF1KB8 HYHMQHEQYRQVISVCERHGEQDPSLWEQALSYFARKEEDCKEYVAAVLKHIENKNLMPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 HYHMQHEQYRQVISVCERHGEQDPSLWEQALSYFARKEEDCKEYVAAVLKHIENKNLMPP
690 700 710 720 730 740
760 770 780 790 800 810
pF1KB8 LLVVQTLAHNSTATLSVIRDYLVQKLQKQSQQIAQDELRVRRYREETTRIRQEIQELKAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LLVVQTLAHNSTATLSVIRDYLVQKLQKQSQQIAQDELRVRRYREETTRIRQEIQELKAS
750 760 770 780 790 800
820 830 840 850 860 870
pF1KB8 PKIFQKTKCSICNSALELPSVHFLCGHSFHQHCFESYSESDADCPTCLPENRKVMDMIRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 PKIFQKTKCSICNSALELPSVHFLCGHSFHQHCFESYSESDADCPTCLPENRKVMDMIRA
810 820 830 840 850 860
880 890 900 910 920 930
pF1KB8 QEQKRDLHDQFQHQLRCSNDSFSVIADYFGRGVFNKLTLLTDPPTARLTSSLEAGLQRDL
:::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS76 QEQKRDLHDQFQHQLKCSNDSFSVIADYFGRGVFNKLTLLTDPPTARLTSSLEAGLQRDL
870 880 890 900 910 920
940
pF1KB8 LMHSRRGT
::::::::
CCDS76 LMHSRRGT
930
941 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 16:06:58 2016 done: Sat Nov 5 16:06:59 2016
Total Scan time: 4.350 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]