FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8511, 941 aa
  1>>>pF1KB8511 941 - 941 aa - 941 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2909+/-0.00109; mu= 6.9159+/- 0.065
 mean_var=142.7015+/-28.154, 0's: 0 Z-trim(107.2): 18  B-trim: 0 in 0/50
 Lambda= 0.107364
 statistics sampled from 9448 (9456) to 9448 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.29), width:  16
 Scan time:  4.290

The best scores are:                                      opt bits E(32554)
CCDS13550.1 PRPF6 gene_id:24148|Hs108|chr20        ( 941) 6307 989.4       0


>>CCDS13550.1 PRPF6 gene_id:24148|Hs108|chr20             (941 aa)
 initn: 6307 init1: 6307 opt: 6307  Z-score: 5286.0  bits: 989.4 E(32554):    0
Smith-Waterman score: 6307; 100.0% identity (100.0% similar) in 941 aa overlap (1-941:1-941)

               10        20        30        40        50        60
pF1KB8 MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MNKKKKPFLGMPAPLGYVPGLGRGATGFTTRSDIGPARDANDPVDDRHAPPGKRTVGDQM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KKNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KKNQAADDDDEDLNDTNYDEFNGYAGSLFSSGPYEKDDEEADAIYAALDKRMDERRKERR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EQREKEEIEKYRMERPKIQQQFSDLKRKLAEVTEEEWLSIPEVGDARNKRQRNPRYEKLT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PVPDSFFAKHLQTGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PVPDSFFAKHLQTGENHTSVDPRQTQFGGLNTPYPGGLNTPYPGGMTPGLMTPGTGELDM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RKIGQARNTLMDMRLSQVSDSVSGQTVVDPKGYLTDLNSMIPTHGGDINDIKKARLLLKS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 VRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDVWLEAARLQPGDTAKA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVRLWKAAVELEEPEDAR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 IMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IMLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 QMVEKIIDRAITSLRANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QMVEKIIDRAITSLRANGVEINREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 HTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HTWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRA
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENDEYER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENDEYER
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB8 ARRLLAKARSSAPTARVFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ARRLLAKARSSAPTARVFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEE
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB8 QKEMMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QKEMMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLW
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB8 LESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRRTKSVDALKKCEHD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRRTKSVDALKKCEHD
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB8 PHVLLAVAKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PHVLLAVAKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKR
              850       860       870       880       890       900

              910       920       930       940 
pF1KB8 CESAEPRHGELWCAVSKDIANWQKKIGDILRLVAGRIKNTF
       :::::::::::::::::::::::::::::::::::::::::
CCDS13 CESAEPRHGELWCAVSKDIANWQKKIGDILRLVAGRIKNTF
              910       920       930       940 




941 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 16:32:29 2016 done: Sat Nov  5 16:32:30 2016
 Total Scan time:  4.290 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]