Result of FASTA (ccds) for
pF1KB8528
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8528, 885 aa
1>>>pF1KB8528 885 - 885 aa - 885 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2145+/-0.000992; mu= 12.3062+/- 0.060
mean_var=116.4626+/-23.179, 0's: 0 Z-trim(108.0): 28 B-trim: 0 in 0/51
Lambda= 0.118845
statistics sampled from 9951 (9957) to 9951 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.665), E-opt: 0.2 (0.306), width: 16
Scan time: 4.370
The best scores are: opt bits E(32554)
CCDS30584.1 EXOSC10 gene_id:5394|Hs108|chr1 ( 885) 5937 1029.6 0
CCDS126.1 EXOSC10 gene_id:5394|Hs108|chr1 ( 860) 4739 824.1 0
>>CCDS30584.1 EXOSC10 gene_id:5394|Hs108|chr1 (885 aa)
initn: 5937 init1: 5937 opt: 5937 Z-score: 5503.9 bits: 1029.6 E(32554): 0
Smith-Waterman score: 5937; 100.0% identity (100.0% similar) in 885 aa overlap (1-885:1-885)
10 20 30 40 50 60
pF1KB8 MAPPSTREPRVLSATSATKSDGEMVLPGFPDADSFVKFALGSVVAVTKASGGLPQFGDEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MAPPSTREPRVLSATSATKSDGEMVLPGFPDADSFVKFALGSVVAVTKASGGLPQFGDEY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DFYRSFPGFQAFCETQGDRLLQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDANDVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DFYRSFPGFQAFCETQGDRLLQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDANDVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LERVGILLDEASGVNKNQQPVLPAGLQVPKTVVSSWNRKAAEYGKKAKSETFRLLHAKNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LERVGILLDEASGVNKNQQPVLPAGLQVPKTVVSSWNRKAAEYGKKAKSETFRLLHAKNI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 IRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 IRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 IHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 IHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVEL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 NEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 NEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 IVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 IVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 LADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 FIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 FIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 AEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGVKKSGPLPSAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 AEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGVKKSGPLPSAE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 RLENVLFGPHDCSHAPPDGYPIIPTSGSVPVQKQASLFPDEKEDNLLGTTCLIATAVITL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 RLENVLFGPHDCSHAPPDGYPIIPTSGSVPVQKQASLFPDEKEDNLLGTTCLIATAVITL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB8 FNEPSAEDSKKGPLTVAQKKAQNIMESFENPFRMFLPSLGHRAPVSQAAKFDPSTKIYEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 FNEPSAEDSKKGPLTVAQKKAQNIMESFENPFRMFLPSLGHRAPVSQAAKFDPSTKIYEI
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB8 SNRWKLAQVQVQKDSKEAVKKKAAEQTAAREQAKEACKAAAEQAISVRQQVVLENAAKKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SNRWKLAQVQVQKDSKEAVKKKAAEQTAAREQAKEACKAAAEQAISVRQQVVLENAAKKR
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB8 ERATSDPRTTEQKQEKKRLKISKKPKDPEPPEKEFTPYDYSQSDFKAFAGNSKSKVSSQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ERATSDPRTTEQKQEKKRLKISKKPKDPEPPEKEFTPYDYSQSDFKAFAGNSKSKVSSQF
790 800 810 820 830 840
850 860 870 880
pF1KB8 DPNKQTPSGKKCIAAKKIKQSVGNKSMSFPTGKSDRGFRYNWPQR
:::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DPNKQTPSGKKCIAAKKIKQSVGNKSMSFPTGKSDRGFRYNWPQR
850 860 870 880
>>CCDS126.1 EXOSC10 gene_id:5394|Hs108|chr1 (860 aa)
initn: 5756 init1: 4686 opt: 4739 Z-score: 4394.0 bits: 824.1 E(32554): 0
Smith-Waterman score: 5710; 97.2% identity (97.2% similar) in 885 aa overlap (1-885:1-860)
10 20 30 40 50 60
pF1KB8 MAPPSTREPRVLSATSATKSDGEMVLPGFPDADSFVKFALGSVVAVTKASGGLPQFGDEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAPPSTREPRVLSATSATKSDGEMVLPGFPDADSFVKFALGSVVAVTKASGGLPQFGDEY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DFYRSFPGFQAFCETQGDRLLQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDANDVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DFYRSFPGFQAFCETQGDRLLQCMSRVMQYHGCRSNIKDRSKVTELEDKFDLLVDANDVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LERVGILLDEASGVNKNQQPVLPAGLQVPKTVVSSWNRKAAEYGKKAKSETFRLLHAKNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LERVGILLDEASGVNKNQQPVLPAGLQVPKTVVSSWNRKAAEYGKKAKSETFRLLHAKNI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 IRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IRPQLKFREKIDNSNTPFLPKIFIKPNAQKPLPQALSKERRERPQDRPEDLDVPPALADF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 IHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IHQQRTQQVEQDMFAHPYQYELNHFTPADAVLQKPQPQLYRPIEETPCHFISSLDELVEL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 NEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NEKLLNCQEFAVDLEHHSYRSFLGLTCLMQISTRTEDFIIDTLELRSDMYILNESLTDPA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 IVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQYQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 LADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNGQPVQLQVVWQRSRDICLKK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 FIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FIKPIFTDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 AEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGVKKSGPLPSAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AEELPKEPQGIIACCNPVPPLVRQQINEMHLLIQQAREMPLLKSEVAAGVKKSGPLPSAE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 RLENVLFGPHDCSHAPPDGYPIIPTSGSVPVQKQASLFPDEKEDNLLGTTCLIATAVITL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RLENVLFGPHDCSHAPPDGYPIIPTSGSVPVQKQASLFPDEKEDNLLGTTCLIATAVITL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB8 FNEPSAEDSKKGPLTVAQKKAQNIMESFENPFRMFLPSLGHRAPVSQAAKFDPSTKIYEI
:::::::::::::::::::::::::::::::::: :
CCDS12 FNEPSAEDSKKGPLTVAQKKAQNIMESFENPFRM-------------------------I
670 680 690
730 740 750 760 770 780
pF1KB8 SNRWKLAQVQVQKDSKEAVKKKAAEQTAAREQAKEACKAAAEQAISVRQQVVLENAAKKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SNRWKLAQVQVQKDSKEAVKKKAAEQTAAREQAKEACKAAAEQAISVRQQVVLENAAKKR
700 710 720 730 740 750
790 800 810 820 830 840
pF1KB8 ERATSDPRTTEQKQEKKRLKISKKPKDPEPPEKEFTPYDYSQSDFKAFAGNSKSKVSSQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ERATSDPRTTEQKQEKKRLKISKKPKDPEPPEKEFTPYDYSQSDFKAFAGNSKSKVSSQF
760 770 780 790 800 810
850 860 870 880
pF1KB8 DPNKQTPSGKKCIAAKKIKQSVGNKSMSFPTGKSDRGFRYNWPQR
:::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DPNKQTPSGKKCIAAKKIKQSVGNKSMSFPTGKSDRGFRYNWPQR
820 830 840 850 860
885 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 16:35:36 2016 done: Sat Nov 5 16:35:36 2016
Total Scan time: 4.370 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]