Result of FASTA (ccds) for
pF1KB8566
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8566, 254 aa
1>>>pF1KB8566 254 - 254 aa - 254 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5773+/-0.000921; mu= 13.6482+/- 0.056
mean_var=81.1927+/-16.011, 0's: 0 Z-trim(107.3): 202 B-trim: 51 in 1/51
Lambda= 0.142336
statistics sampled from 9286 (9508) to 9286 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.685), E-opt: 0.2 (0.292), width: 16
Scan time: 1.910
The best scores are: opt bits E(32554)
CCDS46408.1 RAB6C gene_id:84084|Hs108|chr2 ( 254) 1656 349.5 1.3e-96
CCDS82514.1 WTH3DI gene_id:150786|Hs108|chr2 ( 254) 1641 346.4 1.1e-95
CCDS8223.1 RAB6A gene_id:5870|Hs108|chr11 ( 208) 1210 257.9 4.1e-69
CCDS8224.1 RAB6A gene_id:5870|Hs108|chr11 ( 208) 1199 255.6 2e-68
CCDS3082.1 RAB6B gene_id:51560|Hs108|chr3 ( 208) 1135 242.5 1.8e-64
CCDS58155.1 RAB6A gene_id:5870|Hs108|chr11 ( 175) 1011 216.9 7.2e-57
CCDS35322.2 RAB41 gene_id:347517|Hs108|chrX ( 221) 738 160.9 6.5e-40
CCDS2633.1 RAB5A gene_id:5868|Hs108|chr3 ( 215) 507 113.5 1.2e-25
CCDS11419.1 RAB5C gene_id:5878|Hs108|chr17 ( 216) 493 110.6 8.9e-25
CCDS58551.1 RAB5C gene_id:5878|Hs108|chr17 ( 249) 493 110.7 1e-24
CCDS8900.1 RAB5B gene_id:5869|Hs108|chr12 ( 215) 484 108.8 3.2e-24
CCDS45826.1 RAB31 gene_id:11031|Hs108|chr18 ( 195) 459 103.6 1e-22
CCDS33850.1 RAB43 gene_id:339122|Hs108|chr3 ( 212) 457 103.2 1.5e-22
CCDS12339.1 RAB8A gene_id:4218|Hs108|chr19 ( 207) 445 100.8 8e-22
CCDS10183.1 RAB8B gene_id:51762|Hs108|chr15 ( 207) 441 99.9 1.4e-21
CCDS12372.1 RAB3A gene_id:5864|Hs108|chr19 ( 220) 437 99.1 2.6e-21
CCDS12257.1 RAB3D gene_id:9545|Hs108|chr19 ( 219) 436 98.9 3e-21
CCDS33497.1 RAB22A gene_id:57403|Hs108|chr20 ( 194) 431 97.9 5.6e-21
CCDS46306.1 RAB1A gene_id:5861|Hs108|chr2 ( 205) 430 97.7 6.7e-21
CCDS1058.1 RAB13 gene_id:5872|Hs108|chr1 ( 203) 424 96.4 1.6e-20
CCDS11703.1 RAB37 gene_id:326624|Hs108|chr17 ( 216) 423 96.3 1.9e-20
CCDS9003.1 RAB21 gene_id:23011|Hs108|chr12 ( 225) 423 96.3 2e-20
CCDS3976.1 RAB3C gene_id:115827|Hs108|chr5 ( 227) 419 95.4 3.5e-20
CCDS31613.1 RAB1B gene_id:81876|Hs108|chr11 ( 201) 414 94.4 6.4e-20
CCDS75442.1 RAB44 gene_id:401258|Hs108|chr6 (1021) 423 96.7 6.5e-20
CCDS54161.1 RAB37 gene_id:326624|Hs108|chr17 ( 228) 414 94.4 7.1e-20
CCDS82198.1 RAB37 gene_id:326624|Hs108|chr17 ( 196) 413 94.2 7.3e-20
CCDS10460.1 RAB26 gene_id:25837|Hs108|chr16 ( 256) 414 94.5 7.8e-20
CCDS32722.1 RAB37 gene_id:326624|Hs108|chr17 ( 223) 413 94.2 8e-20
CCDS6175.1 RAB2A gene_id:5862|Hs108|chr8 ( 212) 411 93.8 1e-19
CCDS560.1 RAB3B gene_id:5865|Hs108|chr1 ( 219) 406 92.8 2.1e-19
CCDS1720.1 RAB10 gene_id:10890|Hs108|chr2 ( 200) 405 92.5 2.3e-19
CCDS9570.1 RAB2B gene_id:84932|Hs108|chr14 ( 216) 404 92.4 2.8e-19
CCDS7155.1 RAB18 gene_id:22931|Hs108|chr10 ( 206) 400 91.5 4.8e-19
CCDS76806.1 RAB26 gene_id:25837|Hs108|chr16 ( 190) 395 90.5 9.2e-19
CCDS8264.1 RAB30 gene_id:27314|Hs108|chr11 ( 203) 395 90.5 9.7e-19
CCDS44803.1 CRACR2A gene_id:84766|Hs108|chr12 ( 731) 401 92.1 1.1e-18
CCDS76691.1 RAB15 gene_id:376267|Hs108|chr14 ( 212) 391 89.7 1.8e-18
CCDS14766.1 RAB39B gene_id:116442|Hs108|chrX ( 213) 391 89.7 1.8e-18
CCDS6827.1 RAB14 gene_id:51552|Hs108|chr9 ( 215) 387 88.9 3.2e-18
CCDS2520.1 RAB17 gene_id:64284|Hs108|chr2 ( 212) 385 88.4 4.2e-18
CCDS34762.2 RAB19 gene_id:401409|Hs108|chr7 ( 217) 381 87.6 7.5e-18
CCDS12201.1 RAB11B gene_id:9230|Hs108|chr19 ( 218) 381 87.6 7.5e-18
CCDS14621.1 RAB33A gene_id:9363|Hs108|chrX ( 237) 378 87.0 1.2e-17
CCDS10212.1 RAB11A gene_id:8766|Hs108|chr15 ( 216) 376 86.6 1.5e-17
CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12 ( 201) 373 86.0 2.2e-17
CCDS3052.1 RAB7A gene_id:7879|Hs108|chr3 ( 207) 373 86.0 2.3e-17
CCDS8338.1 RAB39A gene_id:54734|Hs108|chr11 ( 217) 373 86.0 2.3e-17
CCDS58156.1 RAB6A gene_id:5870|Hs108|chr11 ( 104) 361 83.3 7.2e-17
CCDS77710.1 RAB5A gene_id:5868|Hs108|chr3 ( 201) 363 83.9 9.1e-17
>>CCDS46408.1 RAB6C gene_id:84084|Hs108|chr2 (254 aa)
initn: 1656 init1: 1656 opt: 1656 Z-score: 1848.0 bits: 349.5 E(32554): 1.3e-96
Smith-Waterman score: 1656; 99.6% identity (100.0% similar) in 254 aa overlap (1-254:1-254)
10 20 30 40 50 60
pF1KB8 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLFRRVAAALPGMEST
::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
CCDS46 ITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKAGYNVKQLFRRVAAALPGMEST
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCSVNIGLNLFPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCSVNIGLNLFPSL
190 200 210 220 230 240
250
pF1KB8 ITFCNSSLLPVSWR
::::::::::::::
CCDS46 ITFCNSSLLPVSWR
250
>>CCDS82514.1 WTH3DI gene_id:150786|Hs108|chr2 (254 aa)
initn: 1641 init1: 1641 opt: 1641 Z-score: 1831.3 bits: 346.4 E(32554): 1.1e-95
Smith-Waterman score: 1641; 98.4% identity (99.6% similar) in 254 aa overlap (1-254:1-254)
10 20 30 40 50 60
pF1KB8 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
:::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
CCDS82 TIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTEGGSDVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLFRRVAAALPGMEST
::::::.::::::::::.::::::::::::::::::::.:::::::::::::::::::::
CCDS82 ITLVGNKTDLADKRQVSIEEGERKAKGLNVTFIETRAKAGYNVKQLFRRVAAALPGMEST
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCSVNIGLNLFPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 QDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCSVNIGLNLFPSL
190 200 210 220 230 240
250
pF1KB8 ITFCNSSLLPVSWR
::::::::::::::
CCDS82 ITFCNSSLLPVSWR
250
>>CCDS8223.1 RAB6A gene_id:5870|Hs108|chr11 (208 aa)
initn: 1210 init1: 1210 opt: 1210 Z-score: 1354.3 bits: 257.9 E(32554): 4.1e-69
Smith-Waterman score: 1210; 90.9% identity (94.2% similar) in 208 aa overlap (1-208:1-208)
10 20 30 40 50 60
pF1KB8 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDG
::.:::::::::::::::::::::.:::::::: :::::::::: ::::::::::::::
CCDS82 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
:: :.:::::::::.::::: :::::::::::::::::::::::::::::::::::::::
CCDS82 TIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLFRRVAAALPGMEST
: ::::.::::::::::.:::::::: ::: :::: ::.:::::::::::::::::::::
CCDS82 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCSVNIGLNLFPSL
:: ::::: :::::::::: ::::::::
CCDS82 QDRSREDMIDIKLEKPQEQPVSEGGCSC
190 200
>>CCDS8224.1 RAB6A gene_id:5870|Hs108|chr11 (208 aa)
initn: 1199 init1: 1199 opt: 1199 Z-score: 1342.1 bits: 255.6 E(32554): 2e-68
Smith-Waterman score: 1199; 89.4% identity (94.2% similar) in 208 aa overlap (1-208:1-208)
10 20 30 40 50 60
pF1KB8 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDG
::.:::::::::::::::::::::.:::::::: :::::::::: ::::::::::::::
CCDS82 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
:. :.:::::::::.::::: :::::..::::::::::::::::::::::::::::::::
CCDS82 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLFRRVAAALPGMEST
: ::::.::::::::::.:::::::: ::: :::: ::.:::::::::::::::::::::
CCDS82 IMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMEST
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCSVNIGLNLFPSL
:: ::::: :::::::::: ::::::::
CCDS82 QDRSREDMIDIKLEKPQEQPVSEGGCSC
190 200
>>CCDS3082.1 RAB6B gene_id:51560|Hs108|chr3 (208 aa)
initn: 1135 init1: 1135 opt: 1135 Z-score: 1271.0 bits: 242.5 E(32554): 1.8e-64
Smith-Waterman score: 1135; 82.7% identity (93.3% similar) in 208 aa overlap (1-208:1-208)
10 20 30 40 50 60
pF1KB8 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDG
::::::::::::::::::::::::.:::::::: :::::::::: ::::::::::::::
CCDS30 MSAGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI
:. :.:::::::::.::::: :::::..:::::::::.::::::.:::::::::::::::
CCDS30 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLFRRVAAALPGMEST
: ::::.::::::::...::::..:: :.: :::: :::::::::::::::.::::::..
CCDS30 IMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 QDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCSVNIGLNLFPSL
:. :.: : ::::.:::: .:::::::
CCDS30 QEKSKEGMIDIKLDKPQEPPASEGGCSC
190 200
>>CCDS58155.1 RAB6A gene_id:5870|Hs108|chr11 (175 aa)
initn: 1011 init1: 1011 opt: 1011 Z-score: 1134.5 bits: 216.9 E(32554): 7.2e-57
Smith-Waterman score: 1011; 90.8% identity (93.7% similar) in 174 aa overlap (35-208:2-175)
10 20 30 40 50 60
pF1KB8 GDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDGTIGL
:::::::::: :::::::::::::: :: :
CCDS58 MYDSFDNTYQATIGIDFLSKTMYLEDRTIRL
10 20 30
70 80 90 100 110 120
pF1KB8 RLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIITLV
.:::::::::.::::: :::::::::::::::::::::::::::::::::::::::: ::
CCDS58 QLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLV
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 GNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLFRRVAAALPGMESTQDGS
::.::::::::::.:::::::: ::: :::: ::.::::::::::::::::::::::: :
CCDS58 GNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 REDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCSVNIGLNLFPSLITFC
:::: :::::::::: ::::::::
CCDS58 REDMIDIKLEKPQEQPVSEGGCSC
160 170
>>CCDS35322.2 RAB41 gene_id:347517|Hs108|chrX (221 aa)
initn: 722 init1: 681 opt: 738 Z-score: 830.1 bits: 160.9 E(32554): 6.5e-40
Smith-Waterman score: 738; 59.9% identity (79.7% similar) in 207 aa overlap (1-198:11-214)
10 20 30 40
pF1KB8 MSAGGDFG---------NPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNT
: ::: :: . : : ::.:::::: .:::.:.:: :.:: .
CCDS35 MSAFGHDEAWMEAGG-FGLEAAERTEYQSLCKSKLLFLGEQS-GKTSIISRFMYNSFGCA
10 20 30 40 50
50 60 70 80 90 100
pF1KB8 YQAIIGIDFLSKTMYLEDGTIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSF
:: .::::::::::::: . :.:::::::::..:::: :::::. :::::::::.:::
CCDS35 CQATVGIDFLSKTMYLEDQIVQLQLWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSF
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB8 QQTTKWIDDVRTERGSDVIITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGY
..: ::.. ::.:::.::.: :.::. :: .::::..:.::.:...::: :::: :::::
CCDS35 KETDKWVEHVRAERGDDVVIMLLGNKIDLDNKRQVTAEQGEEKSRNLNVMFIETSAKTGY
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB8 NVKQLFRRVAAALPGMESTQDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKP
:::.::::::.:: . . :. .: .:.::. .:
CCDS35 NVKKLFRRVASALLSTR-TSPPPKEGTVEIELESFEESGNRSYC
180 190 200 210 220
230 240 250
pF1KB8 PYSFIDCSVNIGLNLFPSLITFCNSSLLPVSWR
>>CCDS2633.1 RAB5A gene_id:5868|Hs108|chr3 (215 aa)
initn: 500 init1: 500 opt: 507 Z-score: 573.9 bits: 113.5 E(32554): 1.2e-25
Smith-Waterman score: 507; 39.5% identity (69.8% similar) in 205 aa overlap (4-207:11-214)
10 20 30 40 50
pF1KB8 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSK
: . :: . .::::.:::..:.:.::. :: .: . .. :: ::..
CCDS26 MASRGATRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 TMYLEDGTIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT
:. :.: :. ...:::::::: .:: : : : . ::.::::::: .:: .. .:. ...
CCDS26 TVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 ERGSDVIITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLFRRVAAA
. . ...:.: ::..:::.:: :. .:.. : .. :.:: :::..::...: .:
CCDS26 QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 LPGMESTQDGSREDMS-DIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCSVNI
:: : . :. . . : .: . : .. ::
CCDS26 LPKNEPQNPGANSARGRGVDLTEPTQPTRNQC-CSN
190 200 210
240 250
pF1KB8 GLNLFPSLITFCNSSLLPVSWR
>>CCDS11419.1 RAB5C gene_id:5878|Hs108|chr17 (216 aa)
initn: 488 init1: 488 opt: 493 Z-score: 558.3 bits: 110.6 E(32554): 8.9e-25
Smith-Waterman score: 493; 39.0% identity (71.0% similar) in 200 aa overlap (4-200:12-211)
10 20 30 40 50
pF1KB8 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLS
: :: . .::::.:::..:.:.::. :: .: . .. :: ::.
CCDS11 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 KTMYLEDGTIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVR
.:. :.: :. ...:::::::: .:: : : : . ::.:::::::...: .. .:. ...
CCDS11 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 TERGSDVIITLVGNRTDLADKRQVSVEEGERKAKGLNVTFIETRAKTGYNVKQLFRRVAA
. . ...:.:.::..:::.:: : .:.. : .. :.:: :::..::...: .:
CCDS11 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK
130 140 150 160 170 180
180 190 200 210 220
pF1KB8 ALPGME---STQDGSREDMSDIKLEKPQEQTVSEGGCSCYSPMSSSTLPQKPPYSFIDCS
:: : .: .:. :.. ..: ..
CCDS11 KLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN
190 200 210
230 240 250
pF1KB8 VNIGLNLFPSLITFCNSSLLPVSWR
>>CCDS58551.1 RAB5C gene_id:5878|Hs108|chr17 (249 aa)
initn: 488 init1: 488 opt: 493 Z-score: 557.4 bits: 110.7 E(32554): 1e-24
Smith-Waterman score: 493; 39.0% identity (71.0% similar) in 200 aa overlap (4-200:45-244)
10 20 30
pF1KB8 MSAGGDFGNPLRKFKLVFLGEQSVAKTSLITRF
: :: . .::::.:::..:.:.::. ::
CCDS58 LHSTSPHPHALWTTTAGRAMAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRF
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB8 RYDSFDNTYQAIIGIDFLSKTMYLEDGTIGLRLWDTAGQERLRSLIPRYIRDSAAAVVVY
.: . .. :: ::..:. :.: :. ...:::::::: .:: : : : . ::.:::
CCDS58 VKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVY
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB8 DITNVNSFQQTTKWIDDVRTERGSDVIITLVGNRTDLADKRQVSVEEGERKAKGLNVTFI
::::...: .. .:. ... . . ...:.:.::..:::.:: : .:.. : .. :.
CCDS58 DITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFM
140 150 160 170 180 190
160 170 180 190 200 210
pF1KB8 ETRAKTGYNVKQLFRRVAAALPGME---STQDGSREDMSDIKLEKPQEQTVSEGGCSCYS
:: :::..::...: .: :: : .: .:. :.. ..: ..
CCDS58 ETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN
200 210 220 230 240
220 230 240 250
pF1KB8 PMSSSTLPQKPPYSFIDCSVNIGLNLFPSLITFCNSSLLPVSWR
254 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 13:13:08 2016 done: Fri Nov 4 13:13:09 2016
Total Scan time: 1.910 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]