FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8568, 785 aa
  1>>>pF1KB8568 785 - 785 aa - 785 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5330+/-0.00113; mu= 9.4466+/- 0.068
 mean_var=118.8507+/-23.829, 0's: 0 Z-trim(106.0): 45  B-trim: 594 in 2/48
 Lambda= 0.117645
 statistics sampled from 8723 (8755) to 8723 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.269), width:  16
 Scan time:  3.540

The best scores are:                                      opt bits E(32554)
CCDS621.1 USP1 gene_id:7398|Hs108|chr1             ( 785) 5133 883.0       0


>>CCDS621.1 USP1 gene_id:7398|Hs108|chr1                  (785 aa)
 initn: 5133 init1: 5133 opt: 5133  Z-score: 4713.9  bits: 883.0 E(32554):    0
Smith-Waterman score: 5133; 100.0% identity (100.0% similar) in 785 aa overlap (1-785:1-785)

               10        20        30        40        50        60
pF1KB8 MPGVIPSESNGLSRGSPSKKNRLSLKFFQKKETKRALDFTDSQENEEKASEYRASEIDQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MPGVIPSESNGLSRGSPSKKNRLSLKFFQKKETKRALDFTDSQENEEKASEYRASEIDQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 VPAAQSSPINCEKRENLLPFVGLNNLGNTCYLNSILQVLYFCPGFKSGVKHLFNIISRKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 VPAAQSSPINCEKRENLLPFVGLNNLGNTCYLNSILQVLYFCPGFKSGVKHLFNIISRKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 EALKDEANQKDKGNCKEDSLASYELICSLQSLIISVEQLQASFLLNPEKYTDELATQPRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 EALKDEANQKDKGNCKEDSLASYELICSLQSLIISVEQLQASFLLNPEKYTDELATQPRR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LLNTLRELNPMYEGYLQHDAQEVLQCILGNIQETCQLLKKEEVKNVAELPTKVEEIPHPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 LLNTLRELNPMYEGYLQHDAQEVLQCILGNIQETCQLLKKEEVKNVAELPTKVEEIPHPK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 EEMNGINSIEMDSMRHSEDFKEKLPKGNGKRKSDTEFGNMKKKVKLSKEHQSLEENQRQT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 EEMNGINSIEMDSMRHSEDFKEKLPKGNGKRKSDTEFGNMKKKVKLSKEHQSLEENQRQT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 RSKRKATSDTLESPPKIIPKYISENESPRPSQKKSRVKINWLKSATKQPSILSKFCSLGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 RSKRKATSDTLESPPKIIPKYISENESPRPSQKKSRVKINWLKSATKQPSILSKFCSLGK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 ITTNQGVKGQSKENECDPEEDLGKCESDNTTNGCGLESPGNTVTPVNVNEVKPINKGEEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 ITTNQGVKGQSKENECDPEEDLGKCESDNTTNGCGLESPGNTVTPVNVNEVKPINKGEEQ
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 IGFELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEPKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 IGFELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEPKT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 EMKTLRWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFAASGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 EMKTLRWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFAASGL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 EFDCYGGGLSKINTPLLTPLKLSLEEWSTKPTNDSYGLFAVVMHSGITISSGHYTASVKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 EFDCYGGGLSKINTPLLTPLKLSLEEWSTKPTNDSYGLFAVVMHSGITISSGHYTASVKV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 TDLNSLELDKGNFVVDQMCEIGKPEPLNEEEARGVVENYNDEEVSIRVGGNTQPSKVLNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 TDLNSLELDKGNFVVDQMCEIGKPEPLNEEEARGVVENYNDEEVSIRVGGNTQPSKVLNK
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB8 KNVEAIGLLGGQKSKADYELYNKASNPDKVASTAFAENRNSETSDTTGTHESDRNKESSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 KNVEAIGLLGGQKSKADYELYNKASNPDKVASTAFAENRNSETSDTTGTHESDRNKESSD
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB8 QTGINISGFENKISYVVQSLKEYEGKWLLFDDSEVKVTEEKDFLNSLSPSTSPTSTPYLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 QTGINISGFENKISYVVQSLKEYEGKWLLFDDSEVKVTEEKDFLNSLSPSTSPTSTPYLL
              730       740       750       760       770       780

            
pF1KB8 FYKKL
       :::::
CCDS62 FYKKL
            




785 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:13:57 2016 done: Fri Nov  4 13:13:58 2016
 Total Scan time:  3.540 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]