Result of FASTA (omim) for
pF1KB8568
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8568, 785 aa
1>>>pF1KB8568 785 - 785 aa - 785 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.8906+/-0.000474; mu= 7.5147+/- 0.029
mean_var=150.0042+/-30.532, 0's: 0 Z-trim(113.4): 57 B-trim: 21 in 1/53
Lambda= 0.104718
statistics sampled from 22740 (22793) to 22740 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.623), E-opt: 0.2 (0.267), width: 16
Scan time: 13.060
The best scores are: opt bits E(85289)
NP_001017415 (OMIM: 603478) ubiquitin carboxyl-ter ( 785) 5133 788.4 0
NP_001017416 (OMIM: 603478) ubiquitin carboxyl-ter ( 785) 5133 788.4 0
NP_003359 (OMIM: 603478) ubiquitin carboxyl-termin ( 785) 5133 788.4 0
XP_016878257 (OMIM: 604728) PREDICTED: ubiquitin c ( 351) 228 47.1 0.00015
XP_016878255 (OMIM: 604728) PREDICTED: ubiquitin c ( 435) 228 47.2 0.00018
XP_016878256 (OMIM: 604728) PREDICTED: ubiquitin c ( 435) 228 47.2 0.00018
NP_001243631 (OMIM: 604728) ubiquitin carboxyl-ter ( 476) 228 47.2 0.0002
XP_016878254 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 228 47.2 0.0002
XP_016878252 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 228 47.2 0.0002
XP_016878253 (OMIM: 604728) PREDICTED: ubiquitin c ( 498) 228 47.2 0.0002
NP_006528 (OMIM: 604728) ubiquitin carboxyl-termin ( 520) 228 47.2 0.00021
NP_955475 (OMIM: 603486) ubiquitin carboxyl-termin ( 916) 212 45.0 0.0018
NP_003354 (OMIM: 603486) ubiquitin carboxyl-termin ( 963) 212 45.0 0.0019
XP_005269318 (OMIM: 604731) PREDICTED: ubiquitin c ( 648) 200 43.1 0.0047
XP_016875774 (OMIM: 604731) PREDICTED: ubiquitin c ( 860) 200 43.1 0.006
XP_016875773 (OMIM: 604731) PREDICTED: ubiquitin c ( 860) 200 43.1 0.006
NP_006304 (OMIM: 604731) ubiquitin carboxyl-termin ( 952) 200 43.2 0.0065
NP_001239007 (OMIM: 604731) ubiquitin carboxyl-ter ( 981) 200 43.2 0.0067
>>NP_001017415 (OMIM: 603478) ubiquitin carboxyl-termina (785 aa)
initn: 5133 init1: 5133 opt: 5133 Z-score: 4202.2 bits: 788.4 E(85289): 0
Smith-Waterman score: 5133; 100.0% identity (100.0% similar) in 785 aa overlap (1-785:1-785)
10 20 30 40 50 60
pF1KB8 MPGVIPSESNGLSRGSPSKKNRLSLKFFQKKETKRALDFTDSQENEEKASEYRASEIDQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPGVIPSESNGLSRGSPSKKNRLSLKFFQKKETKRALDFTDSQENEEKASEYRASEIDQV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VPAAQSSPINCEKRENLLPFVGLNNLGNTCYLNSILQVLYFCPGFKSGVKHLFNIISRKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPAAQSSPINCEKRENLLPFVGLNNLGNTCYLNSILQVLYFCPGFKSGVKHLFNIISRKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 EALKDEANQKDKGNCKEDSLASYELICSLQSLIISVEQLQASFLLNPEKYTDELATQPRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EALKDEANQKDKGNCKEDSLASYELICSLQSLIISVEQLQASFLLNPEKYTDELATQPRR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 LLNTLRELNPMYEGYLQHDAQEVLQCILGNIQETCQLLKKEEVKNVAELPTKVEEIPHPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLNTLRELNPMYEGYLQHDAQEVLQCILGNIQETCQLLKKEEVKNVAELPTKVEEIPHPK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 EEMNGINSIEMDSMRHSEDFKEKLPKGNGKRKSDTEFGNMKKKVKLSKEHQSLEENQRQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEMNGINSIEMDSMRHSEDFKEKLPKGNGKRKSDTEFGNMKKKVKLSKEHQSLEENQRQT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 RSKRKATSDTLESPPKIIPKYISENESPRPSQKKSRVKINWLKSATKQPSILSKFCSLGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSKRKATSDTLESPPKIIPKYISENESPRPSQKKSRVKINWLKSATKQPSILSKFCSLGK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 ITTNQGVKGQSKENECDPEEDLGKCESDNTTNGCGLESPGNTVTPVNVNEVKPINKGEEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ITTNQGVKGQSKENECDPEEDLGKCESDNTTNGCGLESPGNTVTPVNVNEVKPINKGEEQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 IGFELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEPKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IGFELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEPKT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 EMKTLRWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFAASGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EMKTLRWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFAASGL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 EFDCYGGGLSKINTPLLTPLKLSLEEWSTKPTNDSYGLFAVVMHSGITISSGHYTASVKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EFDCYGGGLSKINTPLLTPLKLSLEEWSTKPTNDSYGLFAVVMHSGITISSGHYTASVKV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 TDLNSLELDKGNFVVDQMCEIGKPEPLNEEEARGVVENYNDEEVSIRVGGNTQPSKVLNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDLNSLELDKGNFVVDQMCEIGKPEPLNEEEARGVVENYNDEEVSIRVGGNTQPSKVLNK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB8 KNVEAIGLLGGQKSKADYELYNKASNPDKVASTAFAENRNSETSDTTGTHESDRNKESSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KNVEAIGLLGGQKSKADYELYNKASNPDKVASTAFAENRNSETSDTTGTHESDRNKESSD
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB8 QTGINISGFENKISYVVQSLKEYEGKWLLFDDSEVKVTEEKDFLNSLSPSTSPTSTPYLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTGINISGFENKISYVVQSLKEYEGKWLLFDDSEVKVTEEKDFLNSLSPSTSPTSTPYLL
730 740 750 760 770 780
pF1KB8 FYKKL
:::::
NP_001 FYKKL
>>NP_001017416 (OMIM: 603478) ubiquitin carboxyl-termina (785 aa)
initn: 5133 init1: 5133 opt: 5133 Z-score: 4202.2 bits: 788.4 E(85289): 0
Smith-Waterman score: 5133; 100.0% identity (100.0% similar) in 785 aa overlap (1-785:1-785)
10 20 30 40 50 60
pF1KB8 MPGVIPSESNGLSRGSPSKKNRLSLKFFQKKETKRALDFTDSQENEEKASEYRASEIDQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPGVIPSESNGLSRGSPSKKNRLSLKFFQKKETKRALDFTDSQENEEKASEYRASEIDQV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VPAAQSSPINCEKRENLLPFVGLNNLGNTCYLNSILQVLYFCPGFKSGVKHLFNIISRKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPAAQSSPINCEKRENLLPFVGLNNLGNTCYLNSILQVLYFCPGFKSGVKHLFNIISRKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 EALKDEANQKDKGNCKEDSLASYELICSLQSLIISVEQLQASFLLNPEKYTDELATQPRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EALKDEANQKDKGNCKEDSLASYELICSLQSLIISVEQLQASFLLNPEKYTDELATQPRR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 LLNTLRELNPMYEGYLQHDAQEVLQCILGNIQETCQLLKKEEVKNVAELPTKVEEIPHPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLNTLRELNPMYEGYLQHDAQEVLQCILGNIQETCQLLKKEEVKNVAELPTKVEEIPHPK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 EEMNGINSIEMDSMRHSEDFKEKLPKGNGKRKSDTEFGNMKKKVKLSKEHQSLEENQRQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEMNGINSIEMDSMRHSEDFKEKLPKGNGKRKSDTEFGNMKKKVKLSKEHQSLEENQRQT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 RSKRKATSDTLESPPKIIPKYISENESPRPSQKKSRVKINWLKSATKQPSILSKFCSLGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSKRKATSDTLESPPKIIPKYISENESPRPSQKKSRVKINWLKSATKQPSILSKFCSLGK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 ITTNQGVKGQSKENECDPEEDLGKCESDNTTNGCGLESPGNTVTPVNVNEVKPINKGEEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ITTNQGVKGQSKENECDPEEDLGKCESDNTTNGCGLESPGNTVTPVNVNEVKPINKGEEQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 IGFELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEPKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IGFELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEPKT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 EMKTLRWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFAASGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EMKTLRWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFAASGL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 EFDCYGGGLSKINTPLLTPLKLSLEEWSTKPTNDSYGLFAVVMHSGITISSGHYTASVKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EFDCYGGGLSKINTPLLTPLKLSLEEWSTKPTNDSYGLFAVVMHSGITISSGHYTASVKV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 TDLNSLELDKGNFVVDQMCEIGKPEPLNEEEARGVVENYNDEEVSIRVGGNTQPSKVLNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TDLNSLELDKGNFVVDQMCEIGKPEPLNEEEARGVVENYNDEEVSIRVGGNTQPSKVLNK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB8 KNVEAIGLLGGQKSKADYELYNKASNPDKVASTAFAENRNSETSDTTGTHESDRNKESSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KNVEAIGLLGGQKSKADYELYNKASNPDKVASTAFAENRNSETSDTTGTHESDRNKESSD
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB8 QTGINISGFENKISYVVQSLKEYEGKWLLFDDSEVKVTEEKDFLNSLSPSTSPTSTPYLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTGINISGFENKISYVVQSLKEYEGKWLLFDDSEVKVTEEKDFLNSLSPSTSPTSTPYLL
730 740 750 760 770 780
pF1KB8 FYKKL
:::::
NP_001 FYKKL
>>NP_003359 (OMIM: 603478) ubiquitin carboxyl-terminal h (785 aa)
initn: 5133 init1: 5133 opt: 5133 Z-score: 4202.2 bits: 788.4 E(85289): 0
Smith-Waterman score: 5133; 100.0% identity (100.0% similar) in 785 aa overlap (1-785:1-785)
10 20 30 40 50 60
pF1KB8 MPGVIPSESNGLSRGSPSKKNRLSLKFFQKKETKRALDFTDSQENEEKASEYRASEIDQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPGVIPSESNGLSRGSPSKKNRLSLKFFQKKETKRALDFTDSQENEEKASEYRASEIDQV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VPAAQSSPINCEKRENLLPFVGLNNLGNTCYLNSILQVLYFCPGFKSGVKHLFNIISRKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VPAAQSSPINCEKRENLLPFVGLNNLGNTCYLNSILQVLYFCPGFKSGVKHLFNIISRKK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 EALKDEANQKDKGNCKEDSLASYELICSLQSLIISVEQLQASFLLNPEKYTDELATQPRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EALKDEANQKDKGNCKEDSLASYELICSLQSLIISVEQLQASFLLNPEKYTDELATQPRR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 LLNTLRELNPMYEGYLQHDAQEVLQCILGNIQETCQLLKKEEVKNVAELPTKVEEIPHPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLNTLRELNPMYEGYLQHDAQEVLQCILGNIQETCQLLKKEEVKNVAELPTKVEEIPHPK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 EEMNGINSIEMDSMRHSEDFKEKLPKGNGKRKSDTEFGNMKKKVKLSKEHQSLEENQRQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EEMNGINSIEMDSMRHSEDFKEKLPKGNGKRKSDTEFGNMKKKVKLSKEHQSLEENQRQT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 RSKRKATSDTLESPPKIIPKYISENESPRPSQKKSRVKINWLKSATKQPSILSKFCSLGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RSKRKATSDTLESPPKIIPKYISENESPRPSQKKSRVKINWLKSATKQPSILSKFCSLGK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 ITTNQGVKGQSKENECDPEEDLGKCESDNTTNGCGLESPGNTVTPVNVNEVKPINKGEEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ITTNQGVKGQSKENECDPEEDLGKCESDNTTNGCGLESPGNTVTPVNVNEVKPINKGEEQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 IGFELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEPKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IGFELVEKLFQGQLVLRTRCLECESLTERREDFQDISVPVQEDELSKVEESSEISPEPKT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 EMKTLRWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFAASGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EMKTLRWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKMPEVITIHLKCFAASGL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 EFDCYGGGLSKINTPLLTPLKLSLEEWSTKPTNDSYGLFAVVMHSGITISSGHYTASVKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 EFDCYGGGLSKINTPLLTPLKLSLEEWSTKPTNDSYGLFAVVMHSGITISSGHYTASVKV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 TDLNSLELDKGNFVVDQMCEIGKPEPLNEEEARGVVENYNDEEVSIRVGGNTQPSKVLNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TDLNSLELDKGNFVVDQMCEIGKPEPLNEEEARGVVENYNDEEVSIRVGGNTQPSKVLNK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB8 KNVEAIGLLGGQKSKADYELYNKASNPDKVASTAFAENRNSETSDTTGTHESDRNKESSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KNVEAIGLLGGQKSKADYELYNKASNPDKVASTAFAENRNSETSDTTGTHESDRNKESSD
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB8 QTGINISGFENKISYVVQSLKEYEGKWLLFDDSEVKVTEEKDFLNSLSPSTSPTSTPYLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QTGINISGFENKISYVVQSLKEYEGKWLLFDDSEVKVTEEKDFLNSLSPSTSPTSTPYLL
730 740 750 760 770 780
pF1KB8 FYKKL
:::::
NP_003 FYKKL
>>XP_016878257 (OMIM: 604728) PREDICTED: ubiquitin carbo (351 aa)
initn: 156 init1: 93 opt: 228 Z-score: 202.6 bits: 47.1 E(85289): 0.00015
Smith-Waterman score: 228; 27.0% identity (60.7% similar) in 178 aa overlap (425-596:140-305)
400 410 420 430 440 450
pF1KB8 GLESPGNTVTPVNVNEVKPINKGEEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQ
.: .: : : .. :: : . ... . :
XP_016 GFNGVSRSAILQENSTLSASNKCCINGASTVVTAIFGGILQNEVNCLICGTESRKFDPFL
110 120 130 140 150 160
460 470 480 490 500 510
pF1KB8 DISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDKYFCENCHHYTE
:.:. . . :: ...: .: . .:: . .:...:.. . :.:..:.. .
XP_016 DLSLDIPSQFRSKRSKNQENGP-----VCSLRDCLRSFTDLEELDETELYMCHKCKKKQK
170 180 190 200 210 220
520 530 540 550 560 570
pF1KB8 AERSLLFDKMPEVITIHLKCFAASGLEFDCYGGGLSKINTPLLTPLK-LSLEEWSTKPTN
. ... ..:.:.:. .::: : .. . :..: . ::. :... . .: :
XP_016 STKKFWIQKLPKVLCLHLKRFHWTAYLRN-------KVDTYVEFPLRGLDMKCYLLEPEN
230 240 250 260 270
580 590 600 610 620
pF1KB8 DS-----YGLFAVVMHSGITISSGHYTASVKVTDLNSLELDKGNFVVDQMCEIGKPEPLN
.. : : :::.: : ..::::::
XP_016 SGPESCLYDLAAVVVHHGSGVGSGHYTAYATHEGRWFHFNDSTVTLTDEETVVKAKAYIL
280 290 300 310 320 330
>>XP_016878255 (OMIM: 604728) PREDICTED: ubiquitin carbo (435 aa)
initn: 234 init1: 93 opt: 228 Z-score: 201.2 bits: 47.2 E(85289): 0.00018
Smith-Waterman score: 228; 27.0% identity (60.7% similar) in 178 aa overlap (425-596:224-389)
400 410 420 430 440 450
pF1KB8 GLESPGNTVTPVNVNEVKPINKGEEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQ
.: .: : : .. :: : . ... . :
XP_016 GFNGVSRSAILQENSTLSASNKCCINGASTVVTAIFGGILQNEVNCLICGTESRKFDPFL
200 210 220 230 240 250
460 470 480 490 500 510
pF1KB8 DISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDKYFCENCHHYTE
:.:. . . :: ...: .: . .:: . .:...:.. . :.:..:.. .
XP_016 DLSLDIPSQFRSKRSKNQENGP-----VCSLRDCLRSFTDLEELDETELYMCHKCKKKQK
260 270 280 290 300
520 530 540 550 560 570
pF1KB8 AERSLLFDKMPEVITIHLKCFAASGLEFDCYGGGLSKINTPLLTPLK-LSLEEWSTKPTN
. ... ..:.:.:. .::: : .. . :..: . ::. :... . .: :
XP_016 STKKFWIQKLPKVLCLHLKRFHWTAYLRN-------KVDTYVEFPLRGLDMKCYLLEPEN
310 320 330 340 350 360
580 590 600 610 620
pF1KB8 DS-----YGLFAVVMHSGITISSGHYTASVKVTDLNSLELDKGNFVVDQMCEIGKPEPLN
.. : : :::.: : ..::::::
XP_016 SGPESCLYDLAAVVVHHGSGVGSGHYTAYATHEGRWFHFNDSTVTLTDEETVVKAKAYIL
370 380 390 400 410 420
>>XP_016878256 (OMIM: 604728) PREDICTED: ubiquitin carbo (435 aa)
initn: 234 init1: 93 opt: 228 Z-score: 201.2 bits: 47.2 E(85289): 0.00018
Smith-Waterman score: 228; 27.0% identity (60.7% similar) in 178 aa overlap (425-596:224-389)
400 410 420 430 440 450
pF1KB8 GLESPGNTVTPVNVNEVKPINKGEEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQ
.: .: : : .. :: : . ... . :
XP_016 GFNGVSRSAILQENSTLSASNKCCINGASTVVTAIFGGILQNEVNCLICGTESRKFDPFL
200 210 220 230 240 250
460 470 480 490 500 510
pF1KB8 DISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDKYFCENCHHYTE
:.:. . . :: ...: .: . .:: . .:...:.. . :.:..:.. .
XP_016 DLSLDIPSQFRSKRSKNQENGP-----VCSLRDCLRSFTDLEELDETELYMCHKCKKKQK
260 270 280 290 300
520 530 540 550 560 570
pF1KB8 AERSLLFDKMPEVITIHLKCFAASGLEFDCYGGGLSKINTPLLTPLK-LSLEEWSTKPTN
. ... ..:.:.:. .::: : .. . :..: . ::. :... . .: :
XP_016 STKKFWIQKLPKVLCLHLKRFHWTAYLRN-------KVDTYVEFPLRGLDMKCYLLEPEN
310 320 330 340 350 360
580 590 600 610 620
pF1KB8 DS-----YGLFAVVMHSGITISSGHYTASVKVTDLNSLELDKGNFVVDQMCEIGKPEPLN
.. : : :::.: : ..::::::
XP_016 SGPESCLYDLAAVVVHHGSGVGSGHYTAYATHEGRWFHFNDSTVTLTDEETVVKAKAYIL
370 380 390 400 410 420
>>NP_001243631 (OMIM: 604728) ubiquitin carboxyl-termina (476 aa)
initn: 234 init1: 93 opt: 228 Z-score: 200.6 bits: 47.2 E(85289): 0.0002
Smith-Waterman score: 228; 27.0% identity (60.7% similar) in 178 aa overlap (425-596:265-430)
400 410 420 430 440 450
pF1KB8 GLESPGNTVTPVNVNEVKPINKGEEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQ
.: .: : : .. :: : . ... . :
NP_001 GFNGVSRSAILQENSTLSASNKCCINGASTVVTAIFGGILQNEVNCLICGTESRKFDPFL
240 250 260 270 280 290
460 470 480 490 500 510
pF1KB8 DISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDKYFCENCHHYTE
:.:. . . :: ...: .: . .:: . .:...:.. . :.:..:.. .
NP_001 DLSLDIPSQFRSKRSKNQENGP-----VCSLRDCLRSFTDLEELDETELYMCHKCKKKQK
300 310 320 330 340
520 530 540 550 560 570
pF1KB8 AERSLLFDKMPEVITIHLKCFAASGLEFDCYGGGLSKINTPLLTPLK-LSLEEWSTKPTN
. ... ..:.:.:. .::: : .. . :..: . ::. :... . .: :
NP_001 STKKFWIQKLPKVLCLHLKRFHWTAYLRN-------KVDTYVEFPLRGLDMKCYLLEPEN
350 360 370 380 390 400
580 590 600 610 620
pF1KB8 DS-----YGLFAVVMHSGITISSGHYTASVKVTDLNSLELDKGNFVVDQMCEIGKPEPLN
.. : : :::.: : ..::::::
NP_001 SGPESCLYDLAAVVVHHGSGVGSGHYTAYATHEGRWFHFNDSTVTLTDEETVVKAKAYIL
410 420 430 440 450 460
>>XP_016878254 (OMIM: 604728) PREDICTED: ubiquitin carbo (498 aa)
initn: 234 init1: 93 opt: 228 Z-score: 200.3 bits: 47.2 E(85289): 0.0002
Smith-Waterman score: 228; 27.0% identity (60.7% similar) in 178 aa overlap (425-596:287-452)
400 410 420 430 440 450
pF1KB8 GLESPGNTVTPVNVNEVKPINKGEEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQ
.: .: : : .. :: : . ... . :
XP_016 GFNGVSRSAILQENSTLSASNKCCINGASTVVTAIFGGILQNEVNCLICGTESRKFDPFL
260 270 280 290 300 310
460 470 480 490 500 510
pF1KB8 DISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDKYFCENCHHYTE
:.:. . . :: ...: .: . .:: . .:...:.. . :.:..:.. .
XP_016 DLSLDIPSQFRSKRSKNQENGP-----VCSLRDCLRSFTDLEELDETELYMCHKCKKKQK
320 330 340 350 360 370
520 530 540 550 560 570
pF1KB8 AERSLLFDKMPEVITIHLKCFAASGLEFDCYGGGLSKINTPLLTPLK-LSLEEWSTKPTN
. ... ..:.:.:. .::: : .. . :..: . ::. :... . .: :
XP_016 STKKFWIQKLPKVLCLHLKRFHWTAYLRN-------KVDTYVEFPLRGLDMKCYLLEPEN
380 390 400 410 420
580 590 600 610 620
pF1KB8 DS-----YGLFAVVMHSGITISSGHYTASVKVTDLNSLELDKGNFVVDQMCEIGKPEPLN
.. : : :::.: : ..::::::
XP_016 SGPESCLYDLAAVVVHHGSGVGSGHYTAYATHEGRWFHFNDSTVTLTDEETVVKAKAYIL
430 440 450 460 470 480
>>XP_016878252 (OMIM: 604728) PREDICTED: ubiquitin carbo (498 aa)
initn: 234 init1: 93 opt: 228 Z-score: 200.3 bits: 47.2 E(85289): 0.0002
Smith-Waterman score: 228; 27.0% identity (60.7% similar) in 178 aa overlap (425-596:287-452)
400 410 420 430 440 450
pF1KB8 GLESPGNTVTPVNVNEVKPINKGEEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQ
.: .: : : .. :: : . ... . :
XP_016 GFNGVSRSAILQENSTLSASNKCCINGASTVVTAIFGGILQNEVNCLICGTESRKFDPFL
260 270 280 290 300 310
460 470 480 490 500 510
pF1KB8 DISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDKYFCENCHHYTE
:.:. . . :: ...: .: . .:: . .:...:.. . :.:..:.. .
XP_016 DLSLDIPSQFRSKRSKNQENGP-----VCSLRDCLRSFTDLEELDETELYMCHKCKKKQK
320 330 340 350 360 370
520 530 540 550 560 570
pF1KB8 AERSLLFDKMPEVITIHLKCFAASGLEFDCYGGGLSKINTPLLTPLK-LSLEEWSTKPTN
. ... ..:.:.:. .::: : .. . :..: . ::. :... . .: :
XP_016 STKKFWIQKLPKVLCLHLKRFHWTAYLRN-------KVDTYVEFPLRGLDMKCYLLEPEN
380 390 400 410 420
580 590 600 610 620
pF1KB8 DS-----YGLFAVVMHSGITISSGHYTASVKVTDLNSLELDKGNFVVDQMCEIGKPEPLN
.. : : :::.: : ..::::::
XP_016 SGPESCLYDLAAVVVHHGSGVGSGHYTAYATHEGRWFHFNDSTVTLTDEETVVKAKAYIL
430 440 450 460 470 480
>>XP_016878253 (OMIM: 604728) PREDICTED: ubiquitin carbo (498 aa)
initn: 234 init1: 93 opt: 228 Z-score: 200.3 bits: 47.2 E(85289): 0.0002
Smith-Waterman score: 228; 27.0% identity (60.7% similar) in 178 aa overlap (425-596:287-452)
400 410 420 430 440 450
pF1KB8 GLESPGNTVTPVNVNEVKPINKGEEQIGFELVEKLFQGQLVLRTRCLECESLTERREDFQ
.: .: : : .. :: : . ... . :
XP_016 GFNGVSRSAILQENSTLSASNKCCINGASTVVTAIFGGILQNEVNCLICGTESRKFDPFL
260 270 280 290 300 310
460 470 480 490 500 510
pF1KB8 DISVPVQEDELSKVEESSEISPEPKTEMKTLRWAISQFASVERIVGEDKYFCENCHHYTE
:.:. . . :: ...: .: . .:: . .:...:.. . :.:..:.. .
XP_016 DLSLDIPSQFRSKRSKNQENGP-----VCSLRDCLRSFTDLEELDETELYMCHKCKKKQK
320 330 340 350 360 370
520 530 540 550 560 570
pF1KB8 AERSLLFDKMPEVITIHLKCFAASGLEFDCYGGGLSKINTPLLTPLK-LSLEEWSTKPTN
. ... ..:.:.:. .::: : .. . :..: . ::. :... . .: :
XP_016 STKKFWIQKLPKVLCLHLKRFHWTAYLRN-------KVDTYVEFPLRGLDMKCYLLEPEN
380 390 400 410 420
580 590 600 610 620
pF1KB8 DS-----YGLFAVVMHSGITISSGHYTASVKVTDLNSLELDKGNFVVDQMCEIGKPEPLN
.. : : :::.: : ..::::::
XP_016 SGPESCLYDLAAVVVHHGSGVGSGHYTAYATHEGRWFHFNDSTVTLTDEETVVKAKAYIL
430 440 450 460 470 480
785 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 13:13:58 2016 done: Fri Nov 4 13:14:00 2016
Total Scan time: 13.060 Total Display time: 0.120
Function used was FASTA [36.3.4 Apr, 2011]