FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8579, 232 aa
  1>>>pF1KB8579 232 - 232 aa - 232 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7626+/-0.000263; mu= 8.2486+/- 0.017
 mean_var=99.2569+/-19.965, 0's: 0 Z-trim(122.2): 8  B-trim: 350 in 1/53
 Lambda= 0.128734
 statistics sampled from 39886 (39894) to 39886 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.468), width:  16
 Scan time:  7.860

The best scores are:                                      opt bits E(85289)
NP_061931 (OMIM: 607729) DNA damage-inducible tran ( 232) 1532 293.8 1.7e-79
NP_660287 (OMIM: 607730) DNA damage-inducible tran ( 193)  362 76.5 3.6e-14


>>NP_061931 (OMIM: 607729) DNA damage-inducible transcri  (232 aa)
 initn: 1532 init1: 1532 opt: 1532  Z-score: 1548.4  bits: 293.8 E(85289): 1.7e-79
Smith-Waterman score: 1532; 99.6% identity (99.6% similar) in 232 aa overlap (1-232:1-232)

               10        20        30        40        50        60
pF1KB8 MPSLWDRFSSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 MPSLWDRFSSSSTSSSPSSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NSGFGPEEDTAYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLAQARLGSRRPARLLMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 NSGFGPEEDTAYLDGVSLPDFELLSDPEDEHLCANLMQLLQESLAQARLGSRRPARLLMP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 SQLVSQVGKELLRLAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLR
              130       140       150       160       170       180

              190       200       210       220       230  
pF1KB8 LDSRLWPKIQGLFSSANSPFLPGFSQSLTLSTGFRVIKKKLYSSEQLPIEEC
       ::::::::::::::::::::::::::::::::::::::::::::::: ::::
NP_061 LDSRLWPKIQGLFSSANSPFLPGFSQSLTLSTGFRVIKKKLYSSEQLLIEEC
              190       200       210       220       230  

>>NP_660287 (OMIM: 607730) DNA damage-inducible transcri  (193 aa)
 initn: 304 init1: 216 opt: 362  Z-score: 375.3  bits: 76.5 E(85289): 3.6e-14
Smith-Waterman score: 362; 35.0% identity (68.9% similar) in 180 aa overlap (48-223:6-183)

        20        30        40        50        60            70   
pF1KB8 SSLPRTPTPDRPPRSAWGSATREEGFDRSTSLESSDCESLDSS-NSGFGPEE---DTAYL
                                     :: :..  :..   . :. ::    :  : 
NP_660                          MVATGSLSSKNPASISELLDCGYHPESLLSDFDYW
                                        10        20        30     

            80        90       100       110       120       130   
pF1KB8 DGVSLPDFELLSDPEDEHLCANLMQLLQESLAQARLGSRRPARLLMPSQLVSQVGKELLR
       : : .:. .:     .:  : ::...:.. :....  .   ...:.: .:........::
NP_660 DYV-VPEPNLNEVIFEESTCQNLVKMLENCLSKSKQTKLGCSKVLVPEKLTQRIAQDVLR
           40        50        60        70        80        90    

           140       150       160       170       180       190   
pF1KB8 LAYSEPCGLRGALLDVCVEQGKSCHSVGQLALDPSLVPTFQLTLVLRLDSRLWPKIQGLF
       :. .::::::: .. : .:  . :... ... : :.::::.::::.. ..  : ... .:
NP_660 LSSTEPCGLRGCVMHVNLEIENVCKKLDRIVCDSSVVPTFELTLVFKQENCSWTSFRDFF
          100       110       120       130       140       150    

           200       210       220       230   
pF1KB8 SSANSPFLPGFSQSLTLSTGFRVIKKKLYSSEQLPIEEC 
        : .  :  :: ..: ::.:::..::::::          
NP_660 FSRGR-FSSGFRRTLILSSGFRLVKKKLYSLIGTTVIEGS
           160       170       180       190   




232 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:43:29 2016 done: Sat Nov  5 21:43:30 2016
 Total Scan time:  7.860 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]