FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8582, 749 aa
  1>>>pF1KB8582 749 - 749 aa - 749 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6568+/-0.0004; mu= 10.2165+/- 0.025
 mean_var=154.4713+/-30.591, 0's: 0 Z-trim(117.3): 16  B-trim: 21 in 1/54
 Lambda= 0.103193
 statistics sampled from 29119 (29133) to 29119 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.342), width:  16
 Scan time: 11.660

The best scores are:                                      opt bits E(85289)
NP_056473 (OMIM: 610770) nucleolar complex protein ( 749) 4935 747.1  6e-215


>>NP_056473 (OMIM: 610770) nucleolar complex protein 2 h  (749 aa)
 initn: 4935 init1: 4935 opt: 4935  Z-score: 3980.0  bits: 747.1 E(85289): 6e-215
Smith-Waterman score: 4935; 99.7% identity (100.0% similar) in 749 aa overlap (1-749:1-749)

               10        20        30        40        50        60
pF1KB8 MAAAGSRKRRLAELTVDEFLASGFDSESESESENSPQAETREAREAARSPDKPGGSPSAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 MAAAGSRKRRLAELTVDEFLASGFDSESESESENSPQAETREAREAARSPDKPGGSPSAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 RRKGRASEHKDQLSRLKDRDPEFYKFLQENDQSLLNFSDSDSSEEEEGPFHSLPDVLEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 RRKGRASEHKDQLSRLKDRDPEFYKFLQENDQSLLNFSDSDSSEEEEGPFHSLPDVLEEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SEEEDGAEEGEDGDRVPRGLKGKKNSVPVTVAMVERWKQAAKQRLTPKLFHEVVQAFQAA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
NP_056 SEEEDGAEEGEDGDRVPRGLKGKKNSVPVTVAMVERWKQAAKQRLTPKLFHEVVQAFRAA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VATTRGDQESAEANKFQVTDSAAFNALVTFCIRDLIGCLQKLLFGKVAKDSSRMLQPSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 VATTRGDQESAEANKFQVTDSAAFNALVTFCIRDLIGCLQKLLFGKVAKDSSRMLQPSSS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 PLWGKLRVDIKAYLGSAIQLVSCLSETTVLAAVLRHISVLVPCFLTFPKQCRMLLKRMVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 PLWGKLRVDIKAYLGSAIQLVSCLSETTVLAAVLRHISVLVPCFLTFPKQCRMLLKRMVV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 VWSTGEESLRVLAFLVLSRVCRHKKDTFLGPVLKQMYITYVRNCEFTSPGALPFISFMQW
       ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
NP_056 VWSTGEESLRVLAFLVLSRVCRHKKDTFLGPVLKQMYITYVRNCKFTSPGALPFISFMQW
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TLTELLALEPGVAYQHAFLYIRQLAIHLRNAMTTRKKETYQSVYNWQYVHCLFLWCRVLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TLTELLALEPGVAYQHAFLYIRQLAIHLRNAMTTRKKETYQSVYNWQYVHCLFLWCRVLS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 TAGPSEALQPLVYPLAQVIIGCIKLIPTARFYPLRMHCIRALTLLSGSSGAFIPVLPFIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 TAGPSEALQPLVYPLAQVIIGCIKLIPTARFYPLRMHCIRALTLLSGSSGAFIPVLPFIL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 EMFQQVDFNRKPGRMSSKPINFSVILKLSNVNLQEKAYRDGLVEQLYDLTLEYLHSQAHC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 EMFQQVDFNRKPGRMSSKPINFSVILKLSNVNLQEKAYRDGLVEQLYDLTLEYLHSQAHC
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB8 IGFPELVLPVVLQLKSFLRECKVANYCRQVQQLLGKVQENSAYICSRRQRVSFGVSEQQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 IGFPELVLPVVLQLKSFLRECKVANYCRQVQQLLGKVQENSAYICSRRQRVSFGVSEQQA
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB8 VEAWEKLTREEGTPLTLYYSHWRKLRDREIQLEISGKERLEDLNFPEIKRRKMADRKDED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 VEAWEKLTREEGTPLTLYYSHWRKLRDREIQLEISGKERLEDLNFPEIKRRKMADRKDED
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB8 RKQFKDLFDLNSSEEDDTEGFSERGILRPLSTRHGVEDDEEDEEEGEEDSSNSEDGDPDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 RKQFKDLFDLNSSEEDDTEGFSERGILRPLSTRHGVEDDEEDEEEGEEDSSNSEDGDPDA
              670       680       690       700       710       720

              730       740         
pF1KB8 EAGLAPGELQQLAQGPEDELEDLQLSEDD
       :::::::::::::::::::::::::::::
NP_056 EAGLAPGELQQLAQGPEDELEDLQLSEDD
              730       740         




749 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:31:25 2016 done: Fri Nov  4 13:31:27 2016
 Total Scan time: 11.660 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]