Result of FASTA (omim) for
pF1KB8585
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8585, 796 aa
1>>>pF1KB8585 796 - 796 aa - 796 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2565+/-0.000459; mu= 21.3042+/- 0.029
mean_var=77.4236+/-17.195, 0's: 0 Z-trim(109.3): 46 B-trim: 1050 in 1/50
Lambda= 0.145760
statistics sampled from 17475 (17481) to 17475 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.551), E-opt: 0.2 (0.205), width: 16
Scan time: 11.870
The best scores are: opt bits E(85289)
NP_060676 (OMIM: 601501,614203) vacuolar protein s ( 796) 5201 1104.2 0
XP_011521529 (OMIM: 601501,614203) PREDICTED: vacu ( 767) 5016 1065.3 0
XP_005256102 (OMIM: 601501,614203) PREDICTED: vacu ( 729) 4771 1013.8 0
>>NP_060676 (OMIM: 601501,614203) vacuolar protein sorti (796 aa)
initn: 5201 init1: 5201 opt: 5201 Z-score: 5909.1 bits: 1104.2 E(85289): 0
Smith-Waterman score: 5201; 99.9% identity (100.0% similar) in 796 aa overlap (1-796:1-796)
10 20 30 40 50 60
pF1KB8 MPTTQQSPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDSLKHASNMLGELRTSMLSP
:::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::
NP_060 MPTTQQSPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 KSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 SFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGEPTDEETTGDISDSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGEPTDEETTGDISDSM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 DFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 IVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 IVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIII
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 ALIDRLALFAHREDGPGIPADIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ALIDRLALFAHREDGPGIPADIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 CYPDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLKLKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 CYPDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLKLKH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 FHPLFEYFDYESRKSMSCYVLSNVLDYNTEIVSQDQVDSIMNLVSTLIQDQPDQPVEDPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 FHPLFEYFDYESRKSMSCYVLSNVLDYNTEIVSQDQVDSIMNLVSTLIQDQPDQPVEDPD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 PEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 PEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 FRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 FRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 TVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 TVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB8 LKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLF
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB8 IEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 IEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLR
730 740 750 760 770 780
790
pF1KB8 RESPESEGPIYEGLIL
::::::::::::::::
NP_060 RESPESEGPIYEGLIL
790
>>XP_011521529 (OMIM: 601501,614203) PREDICTED: vacuolar (767 aa)
initn: 5016 init1: 5016 opt: 5016 Z-score: 5699.1 bits: 1065.3 E(85289): 0
Smith-Waterman score: 5016; 99.9% identity (100.0% similar) in 767 aa overlap (30-796:1-767)
10 20 30 40 50 60
pF1KB8 MPTTQQSPQDEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDSLKHASNMLGELRTSMLSP
::::::::::::.::::::::::::::::::
XP_011 MKRCLDKNKLMDALKHASNMLGELRTSMLSP
10 20 30
70 80 90 100 110 120
pF1KB8 KSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVK
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 SFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGEPTDEETTGDISDSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCTRNILPDEGEPTDEETTGDISDSM
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 DFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELRILVGTNLVRLSQLEGVNVERYKQ
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB8 IVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIII
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB8 ALIDRLALFAHREDGPGIPADIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALIDRLALFAHREDGPGIPADIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMK
280 290 300 310 320 330
370 380 390 400 410 420
pF1KB8 CYPDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLKLKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CYPDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLKIPVDTYNNILTVLKLKH
340 350 360 370 380 390
430 440 450 460 470 480
pF1KB8 FHPLFEYFDYESRKSMSCYVLSNVLDYNTEIVSQDQVDSIMNLVSTLIQDQPDQPVEDPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FHPLFEYFDYESRKSMSCYVLSNVLDYNTEIVSQDQVDSIMNLVSTLIQDQPDQPVEDPD
400 410 420 430 440 450
490 500 510 520 530 540
pF1KB8 PEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLA
460 470 480 490 500 510
550 560 570 580 590 600
pF1KB8 FRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHE
520 530 540 550 560 570
610 620 630 640 650 660
pF1KB8 TVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKL
580 590 600 610 620 630
670 680 690 700 710 720
pF1KB8 LKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLF
640 650 660 670 680 690
730 740 750 760 770 780
pF1KB8 IEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLR
700 710 720 730 740 750
790
pF1KB8 RESPESEGPIYEGLIL
::::::::::::::::
XP_011 RESPESEGPIYEGLIL
760
>>XP_005256102 (OMIM: 601501,614203) PREDICTED: vacuolar (729 aa)
initn: 4771 init1: 4771 opt: 4771 Z-score: 5420.9 bits: 1013.8 E(85289): 0
Smith-Waterman score: 4771; 100.0% identity (100.0% similar) in 729 aa overlap (68-796:1-729)
40 50 60 70 80 90
pF1KB8 KLMDSLKHASNMLGELRTSMLSPKSYYELYMAISDELHYLEVYLTDEFAKGRKVADLYEL
::::::::::::::::::::::::::::::
XP_005 MAISDELHYLEVYLTDEFAKGRKVADLYEL
10 20 30
100 110 120 130 140 150
pF1KB8 VQYAGNIIPRLYLLITVGVVYVKSFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VQYAGNIIPRLYLLITVGVVYVKSFPQSRKDILKDLVEMCRGVQHPLRGLFLRNYLLQCT
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB8 RNILPDEGEPTDEETTGDISDSMDFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RNILPDEGEPTDEETTGDISDSMDFVLLNFAEMNKLWVRMQHQGHSRDREKRERERQELR
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB8 ILVGTNLVRLSQLEGVNVERYKQIVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ILVGTNLVRLSQLEGVNVERYKQIVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQ
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB8 TLNPFLRACAELHQNVNVKNIIIALIDRLALFAHREDGPGIPADIKLFDIFSQQVATVIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TLNPFLRACAELHQNVNVKNIIIALIDRLALFAHREDGPGIPADIKLFDIFSQQVATVIQ
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB8 SRQDMPSEDVVSLQVSLINLAMKCYPDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SRQDMPSEDVVSLQVSLINLAMKCYPDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSKE
280 290 300 310 320 330
400 410 420 430 440 450
pF1KB8 LTRLLKIPVDTYNNILTVLKLKHFHPLFEYFDYESRKSMSCYVLSNVLDYNTEIVSQDQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LTRLLKIPVDTYNNILTVLKLKHFHPLFEYFDYESRKSMSCYVLSNVLDYNTEIVSQDQV
340 350 360 370 380 390
460 470 480 490 500 510
pF1KB8 DSIMNLVSTLIQDQPDQPVEDPDPEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DSIMNLVSTLIQDQPDQPVEDPDPEDFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHF
400 410 420 430 440 450
520 530 540 550 560 570
pF1KB8 GAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELA
460 470 480 490 500 510
580 590 600 610 620 630
pF1KB8 ELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFER
520 530 540 550 560 570
640 650 660 670 680 690
pF1KB8 MKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVM
580 590 600 610 620 630
700 710 720 730 740 750
pF1KB8 ECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNL
640 650 660 670 680 690
760 770 780 790
pF1KB8 ESSEETEQINKHFHNTLEHLRLRRESPESEGPIYEGLIL
:::::::::::::::::::::::::::::::::::::::
XP_005 ESSEETEQINKHFHNTLEHLRLRRESPESEGPIYEGLIL
700 710 720
796 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 13:33:19 2016 done: Fri Nov 4 13:33:20 2016
Total Scan time: 11.870 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]