FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8586, 306 aa
  1>>>pF1KB8586 306 - 306 aa - 306 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2444+/-0.000802; mu= 16.6516+/- 0.049
 mean_var=73.0832+/-14.724, 0's: 0 Z-trim(108.2): 18  B-trim: 0 in 0/49
 Lambda= 0.150026
 statistics sampled from 10075 (10086) to 10075 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.31), width:  16
 Scan time:  2.620

The best scores are:                                      opt bits E(32554)
CCDS584.1 YIPF1 gene_id:54432|Hs108|chr1           ( 306) 2043 451.1 4.8e-127
CCDS12251.1 YIPF2 gene_id:78992|Hs108|chr19        ( 316)  994 224.1 1.1e-58
CCDS82293.1 YIPF2 gene_id:78992|Hs108|chr19        ( 277)  480 112.8 3.1e-25


>>CCDS584.1 YIPF1 gene_id:54432|Hs108|chr1                (306 aa)
 initn: 2043 init1: 2043 opt: 2043  Z-score: 2394.3  bits: 451.1 E(32554): 4.8e-127
Smith-Waterman score: 2043; 100.0% identity (100.0% similar) in 306 aa overlap (1-306:1-306)

               10        20        30        40        50        60
pF1KB8 MAAVDDLQFEEFGNAATSLTANPDATTVNIEDPGETPKHQPGSPRGSGREEDDELLGNDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MAAVDDLQFEEFGNAATSLTANPDATTVNIEDPGETPKHQPGSPRGSGREEDDELLGNDD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 SDKTELLAGQKKSSPFWTFEYYQTFFDVDTYQVFDRIKGSLLPIPGKNFVRLYIRSNPDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SDKTELLAGQKKSSPFWTFEYYQTFFDVDTYQVFDRIKGSLLPIPGKNFVRLYIRSNPDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 YGPFWICATLVFAIAISGNLSNFLIHLGEKTYHYVPEFRKVSIAATIIYAYAWLVPLALW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 YGPFWICATLVFAIAISGNLSNFLIHLGEKTYHYVPEFRKVSIAATIIYAYAWLVPLALW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 GFLMWRNSKVMNIVSYSFLEIVCVYGYSLFIYIPTAILWIIPQKAVRWILVMIALGISGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 GFLMWRNSKVMNIVSYSFLEIVCVYGYSLFIYIPTAILWIIPQKAVRWILVMIALGISGS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 LLAMTFWPAVREDNRRVALATIVTIVLLHMLLSVGCLAYFFDAPEMDHLPTTTATPNQTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LLAMTFWPAVREDNRRVALATIVTIVLLHMLLSVGCLAYFFDAPEMDHLPTTTATPNQTV
              250       260       270       280       290       300

             
pF1KB8 AAAKSS
       ::::::
CCDS58 AAAKSS
             

>>CCDS12251.1 YIPF2 gene_id:78992|Hs108|chr19             (316 aa)
 initn: 1028 init1: 895 opt: 994  Z-score: 1167.1  bits: 224.1 E(32554): 1.1e-58
Smith-Waterman score: 994; 50.0% identity (75.5% similar) in 302 aa overlap (1-297:1-301)

               10        20        30        40        50        60
pF1KB8 MAAVDDLQFEEFGNAATSLTANPDATTVNIEDPGETPKHQPGSPRGSGREEDDELLGNDD
       ::..:.: :.:: .:.. :. .:::.:..  :   ::. . .   :::     :   ...
CCDS12 MASADELTFHEFEEATNLLADTPDAATTSRSDQ-LTPQGHVAVAVGSGGSYGAEDEVEEE
               10        20        30         40        50         

                70         80        90       100       110        
pF1KB8 SDKTELLA-GQKKSSP-FWTFEYYQTFFDVDTYQVFDRIKGSLLPIPGKNFVRLYIRSNP
       :::. ::   :....: :::: :::.:::::: ::.::::::::: ::.:::: ..:. :
CCDS12 SDKAALLQEQQQQQQPGFWTFSYYQSFFDVDTSQVLDRIKGSLLPRPGHNFVRHHLRNRP
      60        70        80        90       100       110         

      120       130       140       150       160       170        
pF1KB8 DLYGPFWICATLVFAIAISGNLSNFLIHLGEKTYHYVPEFRKVSIAATIIYAYAWLVPLA
       ::::::::::::.:..:..:::.  : .  . . :: :.:.::..:.  :: ::::::::
CCDS12 DLYGPFWICATLAFVLAVTGNLTLVLAQRRDPSIHYSPQFHKVTVAGISIYCYAWLVPLA
     120       130       140       150       160       170         

      180       190       200       210       220       230        
pF1KB8 LWGFLMWRNSKVMNIVSYSFLEIVCVYGYSLFIYIPTAILWIIPQKAVRWILVMIALGIS
       ::::: ::..    .  :.::: ::.::::::..:: ..::.::   ..:..  .:::.:
CCDS12 LWGFLRWRKGVQERMGPYTFLETVCIYGYSLFVFIPMVVLWLIPVPWLQWLFGALALGLS
     180       190       200       210       220       230         

      240       250       260       270       280          290     
pF1KB8 GSLLAMTFWPAVREDNRRVALATIVTIVLLHMLLSVGCLAYFFDA--PE-MDHLPTTTAT
       .. :..:.::.::::.: :: . . ..:::: ::..::  :::..  :: .   :  :. 
CCDS12 AAGLVFTLWPVVREDTRLVATVLLSVVVLLHALLAMGCKLYFFQSLPPENVAPPPQITSL
     240       250       260       270       280       290         

         300            
pF1KB8 PNQTVAAAKSS      
       :.               
CCDS12 PSNIALSPTLPQSLAPS
     300       310      

>>CCDS82293.1 YIPF2 gene_id:78992|Hs108|chr19             (277 aa)
 initn: 780 init1: 461 opt: 480  Z-score: 566.6  bits: 112.8 E(32554): 3.1e-25
Smith-Waterman score: 751; 43.4% identity (65.2% similar) in 302 aa overlap (1-297:1-262)

               10        20        30        40        50        60
pF1KB8 MAAVDDLQFEEFGNAATSLTANPDATTVNIEDPGETPKHQPGSPRGSGREEDDELLGNDD
       ::..:.: :.:: .:.. :. .:::.:..  :   ::. . .   :::     :   ...
CCDS82 MASADELTFHEFEEATNLLADTPDAATTSRSDQ-LTPQGHVAVAVGSGGSYGAEDEVEEE
               10        20        30         40        50         

                70         80        90       100       110        
pF1KB8 SDKTELLA-GQKKSSP-FWTFEYYQTFFDVDTYQVFDRIKGSLLPIPGKNFVRLYIRSNP
       :::. ::   :....: :::: :::.:::::: ::.::::::::: ::.:::: ..:. :
CCDS82 SDKAALLQEQQQQQQPGFWTFSYYQSFFDVDTSQVLDRIKGSLLPRPGHNFVRHHLRNRP
      60        70        80        90       100       110         

      120       130       140       150       160       170        
pF1KB8 DLYGPFWICATLVFAIAISGNLSNFLIHLGEKTYHYVPEFRKVSIAATIIYAYAWLVPLA
       :::                                       :..:.  :: ::::::::
CCDS82 DLY---------------------------------------VTVAGISIYCYAWLVPLA
     120                                              130       140

      180       190       200       210       220       230        
pF1KB8 LWGFLMWRNSKVMNIVSYSFLEIVCVYGYSLFIYIPTAILWIIPQKAVRWILVMIALGIS
       ::::: ::..    .  :.::: ::.::::::..:: ..::.::   ..:..  .:::.:
CCDS82 LWGFLRWRKGVQERMGPYTFLETVCIYGYSLFVFIPMVVLWLIPVPWLQWLFGALALGLS
              150       160       170       180       190       200

      240       250       260       270       280          290     
pF1KB8 GSLLAMTFWPAVREDNRRVALATIVTIVLLHMLLSVGCLAYFFDA--PE-MDHLPTTTAT
       .. :..:.::.::::.: :: . . ..:::: ::..::  :::..  :: .   :  :. 
CCDS82 AAGLVFTLWPVVREDTRLVATVLLSVVVLLHALLAMGCKLYFFQSLPPENVAPPPQITSL
              210       220       230       240       250       260

         300            
pF1KB8 PNQTVAAAKSS      
       :.               
CCDS82 PSNIALSPTLPQSLAPS
              270       




306 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:33:54 2016 done: Fri Nov  4 13:33:55 2016
 Total Scan time:  2.620 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]