FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8589, 358 aa
  1>>>pF1KB8589 358 - 358 aa - 358 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6350+/-0.000954; mu= 6.6511+/- 0.057
 mean_var=168.7492+/-35.817, 0's: 0 Z-trim(110.9): 41  B-trim: 0 in 0/51
 Lambda= 0.098731
 statistics sampled from 11939 (11963) to 11939 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.367), width:  16
 Scan time:  2.990

The best scores are:                                      opt bits E(32554)
CCDS5136.1 RNF146 gene_id:81847|Hs108|chr6         ( 358) 2401 353.9 1.2e-97
CCDS56449.1 RNF146 gene_id:81847|Hs108|chr6        ( 359) 2401 353.9 1.2e-97


>>CCDS5136.1 RNF146 gene_id:81847|Hs108|chr6              (358 aa)
 initn: 2401 init1: 2401 opt: 2401  Z-score: 1866.4  bits: 353.9 E(32554): 1.2e-97
Smith-Waterman score: 2401; 100.0% identity (100.0% similar) in 358 aa overlap (1-358:1-358)

               10        20        30        40        50        60
pF1KB8 MAGCGEIDHSINMLPTNRKANESCSNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 MAGCGEIDHSINMLPTNRKANESCSNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KGASWLGKRCALCRQEIPEDFLDKPTLLSPEELKAASRGNGEYAWYYEGRNGWWQYDERT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 KGASWLGKRCALCRQEIPEDFLDKPTLLSPEELKAASRGNGEYAWYYEGRNGWWQYDERT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SRELEDAFSKGKKNTEMLIAGFLYVADLENMVQYRRNEHGRRRKIKRDIIDIPKKGVAGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 SRELEDAFSKGKKNTEMLIAGFLYVADLENMVQYRRNEHGRRRKIKRDIIDIPKKGVAGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 RLDCDANTVNLARESSADGADSVSAQSGASVQPLVSSVRPLTSVDGQLTSPATPSPDAST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 RLDCDANTVNLARESSADGADSVSAQSGASVQPLVSSVRPLTSVDGQLTSPATPSPDAST
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SLEDSFAHLQLSGDNTAERSHRGEGEEDHESPSSGRVPAPDTSIEETESDASSDSEDVSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 SLEDSFAHLQLSGDNTAERSHRGEGEEDHESPSSGRVPAPDTSIEETESDASSDSEDVSA
              250       260       270       280       290       300

              310       320       330       340       350        
pF1KB8 VVAQHSLTQQRLLVSNANQTVPDRSDRSGTDRSVAGGGTVSVSVRSRRPDGQCTVTEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 VVAQHSLTQQRLLVSNANQTVPDRSDRSGTDRSVAGGGTVSVSVRSRRPDGQCTVTEV
              310       320       330       340       350        

>>CCDS56449.1 RNF146 gene_id:81847|Hs108|chr6             (359 aa)
 initn: 2401 init1: 2401 opt: 2401  Z-score: 1866.4  bits: 353.9 E(32554): 1.2e-97
Smith-Waterman score: 2401; 100.0% identity (100.0% similar) in 358 aa overlap (1-358:2-359)

                10        20        30        40        50         
pF1KB8  MAGCGEIDHSINMLPTNRKANESCSNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLC
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MMAGCGEIDHSINMLPTNRKANESCSNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLC
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB8 VKGASWLGKRCALCRQEIPEDFLDKPTLLSPEELKAASRGNGEYAWYYEGRNGWWQYDER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VKGASWLGKRCALCRQEIPEDFLDKPTLLSPEELKAASRGNGEYAWYYEGRNGWWQYDER
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB8 TSRELEDAFSKGKKNTEMLIAGFLYVADLENMVQYRRNEHGRRRKIKRDIIDIPKKGVAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TSRELEDAFSKGKKNTEMLIAGFLYVADLENMVQYRRNEHGRRRKIKRDIIDIPKKGVAG
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KB8 LRLDCDANTVNLARESSADGADSVSAQSGASVQPLVSSVRPLTSVDGQLTSPATPSPDAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 LRLDCDANTVNLARESSADGADSVSAQSGASVQPLVSSVRPLTSVDGQLTSPATPSPDAS
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KB8 TSLEDSFAHLQLSGDNTAERSHRGEGEEDHESPSSGRVPAPDTSIEETESDASSDSEDVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 TSLEDSFAHLQLSGDNTAERSHRGEGEEDHESPSSGRVPAPDTSIEETESDASSDSEDVS
              250       260       270       280       290       300

     300       310       320       330       340       350        
pF1KB8 AVVAQHSLTQQRLLVSNANQTVPDRSDRSGTDRSVAGGGTVSVSVRSRRPDGQCTVTEV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 AVVAQHSLTQQRLLVSNANQTVPDRSDRSGTDRSVAGGGTVSVSVRSRRPDGQCTVTEV
              310       320       330       340       350         




358 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:35:55 2016 done: Fri Nov  4 13:35:55 2016
 Total Scan time:  2.990 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]