Result of FASTA (ccds) for
pF1KB8599
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8599, 244 aa
1>>>pF1KB8599 244 - 244 aa - 244 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7799+/-0.000972; mu= 6.0518+/- 0.057
mean_var=124.9077+/-27.650, 0's: 0 Z-trim(107.5): 145 B-trim: 83 in 1/51
Lambda= 0.114757
statistics sampled from 9405 (9588) to 9405 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.295), width: 16
Scan time: 2.270
The best scores are: opt bits E(32554)
CCDS11220.1 WSB1 gene_id:26118|Hs108|chr17 ( 421) 1626 280.7 1.1e-75
CCDS61252.1 WSB2 gene_id:55884|Hs108|chr12 ( 421) 532 99.5 3.6e-21
CCDS9186.1 WSB2 gene_id:55884|Hs108|chr12 ( 404) 523 98.0 9.9e-21
CCDS11221.1 WSB1 gene_id:26118|Hs108|chr17 ( 275) 515 96.6 1.8e-20
>>CCDS11220.1 WSB1 gene_id:26118|Hs108|chr17 (421 aa)
initn: 1626 init1: 1626 opt: 1626 Z-score: 1472.3 bits: 280.7 E(32554): 1.1e-75
Smith-Waterman score: 1626; 98.7% identity (99.6% similar) in 238 aa overlap (1-238:1-238)
10 20 30 40 50 60
pF1KB8 MASFPPRVNEKEIVRLRTIGELLAPAAPFDKKCGRENWTVAFAPDGSYFAWSQGHRTVKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MASFPPRVNEKEIVRLRTIGELLAPAAPFDKKCGRENWTVAFAPDGSYFAWSQGHRTVKL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VPWSQCLQNFLLHGTKNVTNSSSLRLPRQNSDGGQKNKPREHIIDCGDIVWSLAFGSSVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VPWSQCLQNFLLHGTKNVTNSSSLRLPRQNSDGGQKNKPREHIIDCGDIVWSLAFGSSVP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 EKQSRCVNIEWHRFRFGQDQLLLATGLNSGRIKIWDVYTGKLLLNLVDHTGVVRDLTFAP
::::::::::::::::::::::::::::.::::::::::::::::::::: :::::::::
CCDS11 EKQSRCVNIEWHRFRFGQDQLLLATGLNNGRIKIWDVYTGKLLLNLVDHTEVVRDLTFAP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 DGSLILVSASRDKTLRVWDLRDDGNMMKVLRGHQNWVYSCAFSPDSSMLCSVGASKAVVA
::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS11 DGSLILVSASRDKTLRVWDLKDDGNMMKVLRGHQNWVYSCAFSPDSSMLCSVGASKAVFL
190 200 210 220 230 240
pF1KB8 AILV
CCDS11 WNMDKYTMIRKLEGHHHDVVACDFSPDGALLATASYDTRVYIWDPHNGDILMEFGHLFPP
250 260 270 280 290 300
>>CCDS61252.1 WSB2 gene_id:55884|Hs108|chr12 (421 aa)
initn: 773 init1: 440 opt: 532 Z-score: 493.5 bits: 99.5 E(32554): 3.6e-21
Smith-Waterman score: 702; 52.8% identity (72.0% similar) in 218 aa overlap (23-238:30-238)
10 20 30 40 50
pF1KB8 MASFPPRVNEKEIVRLRTIGELLAPAAP--FDKKCGRENWTVAFAPDGSYFAW
: :. : :: : . :.:.:::.::::.:::
CCDS61 MRVDRESRFLRGTGTGEAVAVEEPLLLAELKPGRPHQFDWKSSCETWSVAFSPDGSWFAW
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 SQGHRTVKLVPWSQCLQNFLLHGTKNVTNSSSLRLPRQNSDGGQKNKPREHIIDCGDIVW
:::: :::.:: : :. .: . . :: .: : ...:.:. .:::.:::
CCDS61 SQGHCIVKLIPWPLEEQ-FIPKGFEAKSRSS------KNETKG-RGSPKEKTLDCGQIVW
70 80 90 100 110
120 130 140 150 160 170
pF1KB8 SLAFGSSVPEKQSRCVNIEWHRFRFGQDQLLLATGLNSGRIKIWDVYTGKLLLNLVDHTG
.::: : : :: . . : . :.::::::.:.::::.: :: ::::: :
CCDS61 GLAF-SPWPSPPSRKLWARHHPQVPDVSCLVLATGLNDGQIKIWEVQTGLLLLNLSGHQD
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 VVRDLTFAPDGSLILVSASRDKTLRVWDLRDDGNMMKVLRGHQNWVYSCAFSPDSSMLCS
:::::.:.:.:::::::::::::::.::: :....:: :: .::: :..::: :::::
CCDS61 VVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLCS
180 190 200 210 220 230
240
pF1KB8 VGASKAVVAAILV
... :.:
CCDS61 AAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCDFSPDSALLVTASYDTNVIMWDPYTGERL
240 250 260 270 280 290
>>CCDS9186.1 WSB2 gene_id:55884|Hs108|chr12 (404 aa)
initn: 773 init1: 440 opt: 523 Z-score: 485.7 bits: 98.0 E(32554): 9.9e-21
Smith-Waterman score: 702; 52.8% identity (72.0% similar) in 218 aa overlap (23-238:13-221)
10 20 30 40 50
pF1KB8 MASFPPRVNEKEIVRLRTIGELLAPAAP--FDKKCGRENWTVAFAPDGSYFAWSQGHRTV
: :. : :: : . :.:.:::.::::.::::::: :
CCDS91 MEAGEEPLLLAELKPGRPHQFDWKSSCETWSVAFSPDGSWFAWSQGHCIV
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 KLVPWSQCLQNFLLHGTKNVTNSSSLRLPRQNSDGGQKNKPREHIIDCGDIVWSLAFGSS
::.:: : :. .: . . :: .: : ...:.:. .:::.:::.::: :
CCDS91 KLIPWPLEEQ-FIPKGFEAKSRSS------KNETKG-RGSPKEKTLDCGQIVWGLAF-SP
60 70 80 90 100
120 130 140 150 160 170
pF1KB8 VPEKQSRCVNIEWHRFRFGQDQLLLATGLNSGRIKIWDVYTGKLLLNLVDHTGVVRDLTF
: :: . . : . :.::::::.:.::::.: :: ::::: : :::::.:
CCDS91 WPSPPSRKLWARHHPQVPDVSCLVLATGLNDGQIKIWEVQTGLLLLNLSGHQDVVRDLSF
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 APDGSLILVSASRDKTLRVWDLRDDGNMMKVLRGHQNWVYSCAFSPDSSMLCSVGASKAV
.:.:::::::::::::::.::: :....:: :: .::: :..::: :::::... :.:
CCDS91 TPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLCSAAGEKSV
170 180 190 200 210 220
240
pF1KB8 VAAILV
CCDS91 FLWSMRSYTLIRKLEGHQSSVVSCDFSPDSALLVTASYDTNVIMWDPYTGERLRSLHHTQ
230 240 250 260 270 280
>>CCDS11221.1 WSB1 gene_id:26118|Hs108|chr17 (275 aa)
initn: 515 init1: 515 opt: 515 Z-score: 480.8 bits: 96.6 E(32554): 1.8e-20
Smith-Waterman score: 515; 97.5% identity (98.7% similar) in 79 aa overlap (160-238:14-92)
130 140 150 160 170 180
pF1KB8 EWHRFRFGQDQLLLATGLNSGRIKIWDVYTGKLLLNLVDHTGVVRDLTFAPDGSLILVSA
::::::::::: ::::::::::::::::::
CCDS11 MASFPPRVNEKEIGKLLLNLVDHTEVVRDLTFAPDGSLILVSA
10 20 30 40
190 200 210 220 230 240
pF1KB8 SRDKTLRVWDLRDDGNMMKVLRGHQNWVYSCAFSPDSSMLCSVGASKAVVAAILV
:::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS11 SRDKTLRVWDLKDDGNMMKVLRGHQNWVYSCAFSPDSSMLCSVGASKAVFLWNMDKYTMI
50 60 70 80 90 100
CCDS11 RKLEGHHHDVVACDFSPDGALLATASYDTRVYIWDPHNGDILMEFGHLFPPPTPIFAGGA
110 120 130 140 150 160
244 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 13:39:05 2016 done: Fri Nov 4 13:39:05 2016
Total Scan time: 2.270 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]