FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8601, 168 aa
  1>>>pF1KB8601 168 - 168 aa - 168 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4864+/-0.00076; mu= 11.6340+/- 0.046
 mean_var=66.6504+/-13.176, 0's: 0 Z-trim(108.0): 11  B-trim: 7 in 1/52
 Lambda= 0.157099
 statistics sampled from 9900 (9904) to 9900 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.304), width:  16
 Scan time:  1.850

The best scores are:                                      opt bits E(32554)
CCDS43111.1 CGGBP1 gene_id:8545|Hs108|chr3         ( 167)  973 228.9 1.2e-60


>>CCDS43111.1 CGGBP1 gene_id:8545|Hs108|chr3              (167 aa)
 initn: 972 init1: 972 opt: 973  Z-score: 1202.5  bits: 228.9 E(32554): 1.2e-60
Smith-Waterman score: 973; 97.4% identity (98.1% similar) in 154 aa overlap (1-154:1-153)

               10        20        30        40        50        60
pF1KB8 MERFVVTAPPARNRSKTALYVTPLDRVTEFGGELHEDGGKLFCTSCNVVLNHVRKSAISD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MERFVVTAPPARNRSKTALYVTPLDRVTEFGGELHEDGGKLFCTSCNVVLNHVRKSAISD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HLKSKTHTKRKAEFEEQNVRKKQRPLTASLQCNSTAQTEKVSVIQDFVKMCLEANIPLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 HLKSKTHTKRKAEFEEQNVRKKQRPLTASLQCNSTAQTEKVSVIQDFVKMCLEANIPLEK
               70        80        90       100       110       120

              130       140       150       160        
pF1KB8 ADHPAVRAFLSRHVKNGGSIPKSDQLRRHIFLMDMRMRINSSTHEIVD
       ::::::::::::::::::::::::::::  .: :              
CCDS43 ADHPAVRAFLSRHVKNGGSIPKSDQLRR-AYLPDGYENENQLLNSQDC
              130       140        150       160       




168 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:15:08 2016 done: Sat Nov  5 20:15:08 2016
 Total Scan time:  1.850 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]