FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8601, 168 aa
  1>>>pF1KB8601 168 - 168 aa - 168 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3955+/-0.000345; mu= 12.4141+/- 0.022
 mean_var=70.7749+/-13.981, 0's: 0 Z-trim(115.0): 14  B-trim: 51 in 1/53
 Lambda= 0.152453
 statistics sampled from 25139 (25145) to 25139 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.68), E-opt: 0.2 (0.295), width:  16
 Scan time:  5.470

The best scores are:                                      opt bits E(85289)
NP_003654 (OMIM: 603363) CGG triplet repeat-bindin ( 167)  973 222.6 2.4e-58
NP_001008391 (OMIM: 603363) CGG triplet repeat-bin ( 167)  973 222.6 2.4e-58
NP_001182237 (OMIM: 603363) CGG triplet repeat-bin ( 167)  973 222.6 2.4e-58
XP_016862844 (OMIM: 603363) PREDICTED: CGG triplet ( 167)  973 222.6 2.4e-58


>>NP_003654 (OMIM: 603363) CGG triplet repeat-binding pr  (167 aa)
 initn: 972 init1: 972 opt: 973  Z-score: 1168.5  bits: 222.6 E(85289): 2.4e-58
Smith-Waterman score: 973; 97.4% identity (98.1% similar) in 154 aa overlap (1-154:1-153)

               10        20        30        40        50        60
pF1KB8 MERFVVTAPPARNRSKTALYVTPLDRVTEFGGELHEDGGKLFCTSCNVVLNHVRKSAISD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MERFVVTAPPARNRSKTALYVTPLDRVTEFGGELHEDGGKLFCTSCNVVLNHVRKSAISD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HLKSKTHTKRKAEFEEQNVRKKQRPLTASLQCNSTAQTEKVSVIQDFVKMCLEANIPLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 HLKSKTHTKRKAEFEEQNVRKKQRPLTASLQCNSTAQTEKVSVIQDFVKMCLEANIPLEK
               70        80        90       100       110       120

              130       140       150       160        
pF1KB8 ADHPAVRAFLSRHVKNGGSIPKSDQLRRHIFLMDMRMRINSSTHEIVD
       ::::::::::::::::::::::::::::  .: :              
NP_003 ADHPAVRAFLSRHVKNGGSIPKSDQLRR-AYLPDGYENENQLLNSQDC
              130       140        150       160       

>>NP_001008391 (OMIM: 603363) CGG triplet repeat-binding  (167 aa)
 initn: 972 init1: 972 opt: 973  Z-score: 1168.5  bits: 222.6 E(85289): 2.4e-58
Smith-Waterman score: 973; 97.4% identity (98.1% similar) in 154 aa overlap (1-154:1-153)

               10        20        30        40        50        60
pF1KB8 MERFVVTAPPARNRSKTALYVTPLDRVTEFGGELHEDGGKLFCTSCNVVLNHVRKSAISD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MERFVVTAPPARNRSKTALYVTPLDRVTEFGGELHEDGGKLFCTSCNVVLNHVRKSAISD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HLKSKTHTKRKAEFEEQNVRKKQRPLTASLQCNSTAQTEKVSVIQDFVKMCLEANIPLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HLKSKTHTKRKAEFEEQNVRKKQRPLTASLQCNSTAQTEKVSVIQDFVKMCLEANIPLEK
               70        80        90       100       110       120

              130       140       150       160        
pF1KB8 ADHPAVRAFLSRHVKNGGSIPKSDQLRRHIFLMDMRMRINSSTHEIVD
       ::::::::::::::::::::::::::::  .: :              
NP_001 ADHPAVRAFLSRHVKNGGSIPKSDQLRR-AYLPDGYENENQLLNSQDC
              130       140        150       160       

>>NP_001182237 (OMIM: 603363) CGG triplet repeat-binding  (167 aa)
 initn: 972 init1: 972 opt: 973  Z-score: 1168.5  bits: 222.6 E(85289): 2.4e-58
Smith-Waterman score: 973; 97.4% identity (98.1% similar) in 154 aa overlap (1-154:1-153)

               10        20        30        40        50        60
pF1KB8 MERFVVTAPPARNRSKTALYVTPLDRVTEFGGELHEDGGKLFCTSCNVVLNHVRKSAISD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MERFVVTAPPARNRSKTALYVTPLDRVTEFGGELHEDGGKLFCTSCNVVLNHVRKSAISD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HLKSKTHTKRKAEFEEQNVRKKQRPLTASLQCNSTAQTEKVSVIQDFVKMCLEANIPLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HLKSKTHTKRKAEFEEQNVRKKQRPLTASLQCNSTAQTEKVSVIQDFVKMCLEANIPLEK
               70        80        90       100       110       120

              130       140       150       160        
pF1KB8 ADHPAVRAFLSRHVKNGGSIPKSDQLRRHIFLMDMRMRINSSTHEIVD
       ::::::::::::::::::::::::::::  .: :              
NP_001 ADHPAVRAFLSRHVKNGGSIPKSDQLRR-AYLPDGYENENQLLNSQDC
              130       140        150       160       

>>XP_016862844 (OMIM: 603363) PREDICTED: CGG triplet rep  (167 aa)
 initn: 972 init1: 972 opt: 973  Z-score: 1168.5  bits: 222.6 E(85289): 2.4e-58
Smith-Waterman score: 973; 97.4% identity (98.1% similar) in 154 aa overlap (1-154:1-153)

               10        20        30        40        50        60
pF1KB8 MERFVVTAPPARNRSKTALYVTPLDRVTEFGGELHEDGGKLFCTSCNVVLNHVRKSAISD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MERFVVTAPPARNRSKTALYVTPLDRVTEFGGELHEDGGKLFCTSCNVVLNHVRKSAISD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HLKSKTHTKRKAEFEEQNVRKKQRPLTASLQCNSTAQTEKVSVIQDFVKMCLEANIPLEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HLKSKTHTKRKAEFEEQNVRKKQRPLTASLQCNSTAQTEKVSVIQDFVKMCLEANIPLEK
               70        80        90       100       110       120

              130       140       150       160        
pF1KB8 ADHPAVRAFLSRHVKNGGSIPKSDQLRRHIFLMDMRMRINSSTHEIVD
       ::::::::::::::::::::::::::::  .: :              
XP_016 ADHPAVRAFLSRHVKNGGSIPKSDQLRR-AYLPDGYENENQLLNSQDC
              130       140        150       160       




168 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:15:09 2016 done: Sat Nov  5 20:15:09 2016
 Total Scan time:  5.470 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]