FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8603, 412 aa
  1>>>pF1KB8603 412 - 412 aa - 412 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3951+/-0.000856; mu= 16.4495+/- 0.051
 mean_var=63.8414+/-12.556, 0's: 0 Z-trim(105.8): 20  B-trim: 0 in 0/50
 Lambda= 0.160518
 statistics sampled from 8638 (8646) to 8638 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.266), width:  16
 Scan time:  2.640

The best scores are:                                      opt bits E(32554)
CCDS53313.1 EIF2B3 gene_id:8891|Hs108|chr1         ( 412) 2713 637.1 9.3e-183
CCDS72775.1 EIF2B3 gene_id:8891|Hs108|chr1         ( 401) 2631 618.1 4.7e-177
CCDS517.1 EIF2B3 gene_id:8891|Hs108|chr1           ( 452) 2631 618.1 5.2e-177


>>CCDS53313.1 EIF2B3 gene_id:8891|Hs108|chr1              (412 aa)
 initn: 2713 init1: 2713 opt: 2713  Z-score: 3394.6  bits: 637.1 E(32554): 9.3e-183
Smith-Waterman score: 2713; 100.0% identity (100.0% similar) in 412 aa overlap (1-412:1-412)

               10        20        30        40        50        60
pF1KB8 MEFQAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTTRDVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MEFQAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTTRDVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDVLVLSCDLITDVALHEVVDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDVLVLSCDLITDVALHEVVDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FRAYDASLAMLMRKGQDSIEPVPGQKGKKKAVEQRDFIGVDSTGKRLLFMANEADLDEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FRAYDASLAMLMRKGQDSIEPVPGQKGKKKAVEQRDFIGVDSTGKRLLFMANEADLDEEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VIKGSILQKHPRIRFHTGLVDAHLYCLKKYIVDFLMENGSITSIRSELIPYLVRKQFSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VIKGSILQKHPRIRFHTGLVDAHLYCLKKYIVDFLMENGSITSIRSELIPYLVRKQFSSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLNLAPYDACWNACRGDRWEDLSRSQVRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLNLAPYDACWNACRGDRWEDLSRSQVRC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 YVHIMKEGLCSRVSTLGLYMEANRQVPKLLSALCPEEPPVHSSAQIVSKHLVGVDSLIGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 YVHIMKEGLCSRVSTLGLYMEANRQVPKLLSALCPEEPPVHSSAQIVSKHLVGVDSLIGP
              310       320       330       340       350       360

              370       380       390       400       410  
pF1KB8 ETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVEEGYVSPCTHLRQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVEEGYVSPCTHLRQR
              370       380       390       400       410  

>>CCDS72775.1 EIF2B3 gene_id:8891|Hs108|chr1              (401 aa)
 initn: 2631 init1: 2631 opt: 2631  Z-score: 3292.1  bits: 618.1 E(32554): 4.7e-177
Smith-Waterman score: 2631; 100.0% identity (100.0% similar) in 401 aa overlap (1-401:1-401)

               10        20        30        40        50        60
pF1KB8 MEFQAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTTRDVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 MEFQAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTTRDVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDVLVLSCDLITDVALHEVVDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 KALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDVLVLSCDLITDVALHEVVDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FRAYDASLAMLMRKGQDSIEPVPGQKGKKKAVEQRDFIGVDSTGKRLLFMANEADLDEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 FRAYDASLAMLMRKGQDSIEPVPGQKGKKKAVEQRDFIGVDSTGKRLLFMANEADLDEEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VIKGSILQKHPRIRFHTGLVDAHLYCLKKYIVDFLMENGSITSIRSELIPYLVRKQFSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 VIKGSILQKHPRIRFHTGLVDAHLYCLKKYIVDFLMENGSITSIRSELIPYLVRKQFSSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLNLAPYDACWNACRGDRWEDLSRSQVRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLNLAPYDACWNACRGDRWEDLSRSQVRC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 YVHIMKEGLCSRVSTLGLYMEANRQVPKLLSALCPEEPPVHSSAQIVSKHLVGVDSLIGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 YVHIMKEGLCSRVSTLGLYMEANRQVPKLLSALCPEEPPVHSSAQIVSKHLVGVDSLIGP
              310       320       330       340       350       360

              370       380       390       400       410  
pF1KB8 ETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVEEGYVSPCTHLRQR
       :::::::::::::::::::::::::::::::::::::::::           
CCDS72 ETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVEEG           
              370       380       390       400            

>>CCDS517.1 EIF2B3 gene_id:8891|Hs108|chr1                (452 aa)
 initn: 2631 init1: 2631 opt: 2631  Z-score: 3291.3  bits: 618.1 E(32554): 5.2e-177
Smith-Waterman score: 2631; 100.0% identity (100.0% similar) in 401 aa overlap (1-401:1-401)

               10        20        30        40        50        60
pF1KB8 MEFQAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTTRDVQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 MEFQAVVMAVGGGSRMTDLTSSIPKPLLPVGNKPLIWYPLNLLERVGFEEVIVVTTRDVQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 KALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDVLVLSCDLITDVALHEVVDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 KALCAEFKMKMKPDIVCIPDDADMGTADSLRYIYPKLKTDVLVLSCDLITDVALHEVVDL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 FRAYDASLAMLMRKGQDSIEPVPGQKGKKKAVEQRDFIGVDSTGKRLLFMANEADLDEEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 FRAYDASLAMLMRKGQDSIEPVPGQKGKKKAVEQRDFIGVDSTGKRLLFMANEADLDEEL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 VIKGSILQKHPRIRFHTGLVDAHLYCLKKYIVDFLMENGSITSIRSELIPYLVRKQFSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 VIKGSILQKHPRIRFHTGLVDAHLYCLKKYIVDFLMENGSITSIRSELIPYLVRKQFSSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLNLAPYDACWNACRGDRWEDLSRSQVRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 SSQQGQEEKEEDLKKKELKSLDIYSFIKEANTLNLAPYDACWNACRGDRWEDLSRSQVRC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 YVHIMKEGLCSRVSTLGLYMEANRQVPKLLSALCPEEPPVHSSAQIVSKHLVGVDSLIGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 YVHIMKEGLCSRVSTLGLYMEANRQVPKLLSALCPEEPPVHSSAQIVSKHLVGVDSLIGP
              310       320       330       340       350       360

              370       380       390       400       410          
pF1KB8 ETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVEEGYVSPCTHLRQR        
       :::::::::::::::::::::::::::::::::::::::::                   
CCDS51 ETQIGEKSSIKRSVIGSSCLIKDRVTITNCLLMNSVTVEEGSNIQGSVICNNAVIEKGAD
              370       380       390       400       410       420

CCDS51 IKDCLIGSGQRIEAKAKRVNEVIVGNDQLMEI
              430       440       450  




412 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:40:09 2016 done: Fri Nov  4 13:40:10 2016
 Total Scan time:  2.640 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]