FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8604, 413 aa
  1>>>pF1KB8604 413 - 413 aa - 413 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9840+/-0.000778; mu= 6.6893+/- 0.047
 mean_var=184.4738+/-37.387, 0's: 0 Z-trim(115.2): 29  B-trim: 2 in 1/52
 Lambda= 0.094429
 statistics sampled from 15741 (15768) to 15741 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.484), width:  16
 Scan time:  3.000

The best scores are:                                      opt bits E(32554)
CCDS32961.1 FKBP8 gene_id:23770|Hs108|chr19        ( 413) 2726 383.2 2.5e-106
CCDS77266.1 FKBP8 gene_id:23770|Hs108|chr19        ( 412) 2709 380.8 1.2e-105


>>CCDS32961.1 FKBP8 gene_id:23770|Hs108|chr19             (413 aa)
 initn: 2726 init1: 2726 opt: 2726  Z-score: 2022.4  bits: 383.2 E(32554): 2.5e-106
Smith-Waterman score: 2726; 100.0% identity (100.0% similar) in 413 aa overlap (1-413:1-413)

               10        20        30        40        50        60
pF1KB8 MASCAEPSEPSAPLPAGVPPLEDFEVLDGVEDAEGEEEEEEEEEEEDDLSELPPLEDMGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MASCAEPSEPSAPLPAGVPPLEDFEVLDGVEDAEGEEEEEEEEEEEDDLSELPPLEDMGQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PPAEEAEQPGALAREFLAAMEPEPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRPVKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PPAEEAEQPGALAREFLAAMEPEPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRPVKG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 QVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PQGSRSPYIPPHAALCLEVTLKTAVDGPDLEMLTGQERVALANRKRECGNAHYQRADFVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PQGSRSPYIPPHAALCLEVTLKTAVDGPDLEMLTGQERVALANRKRECGNAHYQRADFVL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 AANSYDLAIKAITSSAKVDMTFEEEAQLLQLKVKCLNNLAASQLKLDHYRAALRSCSLVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AANSYDLAIKAITSSAKVDMTFEEEAQLLQLKVKCLNNLAASQLKLDHYRAALRSCSLVL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 EHQPDNIKALFRKGKVLAQQGEYSEAIPILRAALKLEPSNKTIHAELSKLVKKHAAQRST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EHQPDNIKALFRKGKVLAQQGEYSEAIPILRAALKLEPSNKTIHAELSKLVKKHAAQRST
              310       320       330       340       350       360

              370       380       390       400       410   
pF1KB8 ETALYRKMLGNPSRLPAKCPGKGAWSIPWKWLFGATAVALGGVALSVVIAARN
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ETALYRKMLGNPSRLPAKCPGKGAWSIPWKWLFGATAVALGGVALSVVIAARN
              370       380       390       400       410   

>>CCDS77266.1 FKBP8 gene_id:23770|Hs108|chr19             (412 aa)
 initn: 1484 init1: 1484 opt: 2709  Z-score: 2009.9  bits: 380.8 E(32554): 1.2e-105
Smith-Waterman score: 2709; 99.8% identity (99.8% similar) in 413 aa overlap (1-413:1-412)

               10        20        30        40        50        60
pF1KB8 MASCAEPSEPSAPLPAGVPPLEDFEVLDGVEDAEGEEEEEEEEEEEDDLSELPPLEDMGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MASCAEPSEPSAPLPAGVPPLEDFEVLDGVEDAEGEEEEEEEEEEEDDLSELPPLEDMGQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 PPAEEAEQPGALAREFLAAMEPEPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRPVKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PPAEEAEQPGALAREFLAAMEPEPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRPVKG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 QVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 PQGSRSPYIPPHAALCLEVTLKTAVDGPDLEMLTGQERVALANRKRECGNAHYQRADFVL
       ::: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PQG-RSPYIPPHAALCLEVTLKTAVDGPDLEMLTGQERVALANRKRECGNAHYQRADFVL
               190       200       210       220       230         

              250       260       270       280       290       300
pF1KB8 AANSYDLAIKAITSSAKVDMTFEEEAQLLQLKVKCLNNLAASQLKLDHYRAALRSCSLVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AANSYDLAIKAITSSAKVDMTFEEEAQLLQLKVKCLNNLAASQLKLDHYRAALRSCSLVL
     240       250       260       270       280       290         

              310       320       330       340       350       360
pF1KB8 EHQPDNIKALFRKGKVLAQQGEYSEAIPILRAALKLEPSNKTIHAELSKLVKKHAAQRST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 EHQPDNIKALFRKGKVLAQQGEYSEAIPILRAALKLEPSNKTIHAELSKLVKKHAAQRST
     300       310       320       330       340       350         

              370       380       390       400       410   
pF1KB8 ETALYRKMLGNPSRLPAKCPGKGAWSIPWKWLFGATAVALGGVALSVVIAARN
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 ETALYRKMLGNPSRLPAKCPGKGAWSIPWKWLFGATAVALGGVALSVVIAARN
     360       370       380       390       400       410  




413 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 01:35:39 2016 done: Sat Nov  5 01:35:39 2016
 Total Scan time:  3.000 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]