FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8616, 368 aa
  1>>>pF1KB8616 368 - 368 aa - 368 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9512+/-0.00083; mu= 9.4613+/- 0.050
 mean_var=106.7940+/-20.723, 0's: 0 Z-trim(110.5): 14  B-trim: 81 in 1/52
 Lambda= 0.124108
 statistics sampled from 11619 (11625) to 11619 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.357), width:  16
 Scan time:  2.880

The best scores are:                                      opt bits E(32554)
CCDS32252.1 POLR2M gene_id:81488|Hs108|chr15       ( 368) 2413 442.4  3e-124
CCDS73732.1 GCOM1 gene_id:145781|Hs108|chr15       ( 765) 2167 398.5  1e-110
CCDS42045.1 POLR2M gene_id:81488|Hs108|chr15       ( 211) 1137 213.8 1.1e-55
CCDS32247.1 GCOM1 gene_id:145781|Hs108|chr15       ( 550)  764 147.2 3.2e-35


>>CCDS32252.1 POLR2M gene_id:81488|Hs108|chr15            (368 aa)
 initn: 2413 init1: 2413 opt: 2413  Z-score: 2344.1  bits: 442.4 E(32554): 3e-124
Smith-Waterman score: 2413; 100.0% identity (100.0% similar) in 368 aa overlap (1-368:1-368)

               10        20        30        40        50        60
pF1KB8 MCSLPRGFEPQAPEDLAQRSLVELREMLKRQERLLRNEKFICKLPDKGKKIFDSFAKLKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MCSLPRGFEPQAPEDLAQRSLVELREMLKRQERLLRNEKFICKLPDKGKKIFDSFAKLKA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 AIAECEEVRRKSELFNPVSLDCKLRQKAIAEVDVGTDKAQNSDPILDTSSLVPGCSSVDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AIAECEEVRRKSELFNPVSLDCKLRQKAIAEVDVGTDKAQNSDPILDTSSLVPGCSSVDN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 IKSSQTSQNQGLGRPTLEGDEETSEVEYTVNKGPASSNRDRVPPSSEASEHHPRHRVSSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IKSSQTSQNQGLGRPTLEGDEETSEVEYTVNKGPASSNRDRVPPSSEASEHHPRHRVSSQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 AEDTSSSFDNLFIDRLQRITIADQGEQQSEENASTKNLTGLSSGTEKKPHYMEVLEMRAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AEDTSSSFDNLFIDRLQRITIADQGEQQSEENASTKNLTGLSSGTEKKPHYMEVLEMRAK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 NPVPQLRKFKTNVLPFRQNDSSSHCQKSGSPISSEERRRRDKQHLDDITAARLLPLHHMP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NPVPQLRKFKTNVLPFRQNDSSSHCQKSGSPISSEERRRRDKQHLDDITAARLLPLHHMP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 TQLLSIEESLALQKQQKQNYEEMQAKLAAQKLAERLNIKMRSYNPEGESSGRYREVRDED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TQLLSIEESLALQKQQKQNYEEMQAKLAAQKLAERLNIKMRSYNPEGESSGRYREVRDED
              310       320       330       340       350       360

               
pF1KB8 DDWSSDEF
       ::::::::
CCDS32 DDWSSDEF
               

>>CCDS73732.1 GCOM1 gene_id:145781|Hs108|chr15            (765 aa)
 initn: 2160 init1: 2160 opt: 2167  Z-score: 2101.1  bits: 398.5 E(32554): 1e-110
Smith-Waterman score: 2167; 96.0% identity (97.1% similar) in 350 aa overlap (19-368:418-765)

                           10        20        30        40        
pF1KB8             MCSLPRGFEPQAPEDLAQRSLVELREMLKRQERLLRNEKFICKLPDKG
                                     .. :: ::.    . : :  ::::::::::
CCDS73 ILQLLEKISFLEGENNELQSRLDYLTETQAKTEVETREIGVGCDLLPR--KFICKLPDKG
       390       400       410       420       430         440     

       50        60        70        80        90       100        
pF1KB8 KKIFDSFAKLKAAIAECEEVRRKSELFNPVSLDCKLRQKAIAEVDVGTDKAQNSDPILDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KKIFDSFAKLKAAIAECEEVRRKSELFNPVSLDCKLRQKAIAEVDVGTDKAQNSDPILDT
         450       460       470       480       490       500     

      110       120       130       140       150       160        
pF1KB8 SSLVPGCSSVDNIKSSQTSQNQGLGRPTLEGDEETSEVEYTVNKGPASSNRDRVPPSSEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SSLVPGCSSVDNIKSSQTSQNQGLGRPTLEGDEETSEVEYTVNKGPASSNRDRVPPSSEA
         510       520       530       540       550       560     

      170       180       190       200       210       220        
pF1KB8 SEHHPRHRVSSQAEDTSSSFDNLFIDRLQRITIADQGEQQSEENASTKNLTGLSSGTEKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SEHHPRHRVSSQAEDTSSSFDNLFIDRLQRITIADQGEQQSEENASTKNLTGLSSGTEKK
         570       580       590       600       610       620     

      230       240       250       260       270       280        
pF1KB8 PHYMEVLEMRAKNPVPQLRKFKTNVLPFRQNDSSSHCQKSGSPISSEERRRRDKQHLDDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PHYMEVLEMRAKNPVPQLRKFKTNVLPFRQNDSSSHCQKSGSPISSEERRRRDKQHLDDI
         630       640       650       660       670       680     

      290       300       310       320       330       340        
pF1KB8 TAARLLPLHHMPTQLLSIEESLALQKQQKQNYEEMQAKLAAQKLAERLNIKMRSYNPEGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TAARLLPLHHMPTQLLSIEESLALQKQQKQNYEEMQAKLAAQKLAERLNIKMRSYNPEGE
         690       700       710       720       730       740     

      350       360        
pF1KB8 SSGRYREVRDEDDDWSSDEF
       ::::::::::::::::::::
CCDS73 SSGRYREVRDEDDDWSSDEF
         750       760     

>>CCDS42045.1 POLR2M gene_id:81488|Hs108|chr15            (211 aa)
 initn: 1137 init1: 1137 opt: 1137  Z-score: 1113.1  bits: 213.8 E(32554): 1.1e-55
Smith-Waterman score: 1137; 96.7% identity (98.9% similar) in 180 aa overlap (189-368:32-211)

      160       170       180       190       200       210        
pF1KB8 RDRVPPSSEASEHHPRHRVSSQAEDTSSSFDNLFIDRLQRITIADQGEQQSEENASTKNL
                                     . :. ..:::::::::::::::::::::::
CCDS42 CSLPRGFEPQAPEDLAQRSLVELREMLKRQERLLRNELQRITIADQGEQQSEENASTKNL
              10        20        30        40        50        60 

      220       230       240       250       260       270        
pF1KB8 TGLSSGTEKKPHYMEVLEMRAKNPVPQLRKFKTNVLPFRQNDSSSHCQKSGSPISSEERR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TGLSSGTEKKPHYMEVLEMRAKNPVPQLRKFKTNVLPFRQNDSSSHCQKSGSPISSEERR
              70        80        90       100       110       120 

      280       290       300       310       320       330        
pF1KB8 RRDKQHLDDITAARLLPLHHMPTQLLSIEESLALQKQQKQNYEEMQAKLAAQKLAERLNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RRDKQHLDDITAARLLPLHHMPTQLLSIEESLALQKQQKQNYEEMQAKLAAQKLAERLNI
             130       140       150       160       170       180 

      340       350       360        
pF1KB8 KMRSYNPEGESSGRYREVRDEDDDWSSDEF
       ::::::::::::::::::::::::::::::
CCDS42 KMRSYNPEGESSGRYREVRDEDDDWSSDEF
             190       200       210 

>>CCDS32247.1 GCOM1 gene_id:145781|Hs108|chr15            (550 aa)
 initn: 764 init1: 764 opt: 764  Z-score: 745.7  bits: 147.2 E(32554): 3.2e-35
Smith-Waterman score: 764; 100.0% identity (100.0% similar) in 115 aa overlap (254-368:436-550)

           230       240       250       260       270       280   
pF1KB8 GTEKKPHYMEVLEMRAKNPVPQLRKFKTNVLPFRQNDSSSHCQKSGSPISSEERRRRDKQ
                                     ::::::::::::::::::::::::::::::
CCDS32 QSRLDYLTETQAKTEVETREIGVGCDLLPRLPFRQNDSSSHCQKSGSPISSEERRRRDKQ
         410       420       430       440       450       460     

           290       300       310       320       330       340   
pF1KB8 HLDDITAARLLPLHHMPTQLLSIEESLALQKQQKQNYEEMQAKLAAQKLAERLNIKMRSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 HLDDITAARLLPLHHMPTQLLSIEESLALQKQQKQNYEEMQAKLAAQKLAERLNIKMRSY
         470       480       490       500       510       520     

           350       360        
pF1KB8 NPEGESSGRYREVRDEDDDWSSDEF
       :::::::::::::::::::::::::
CCDS32 NPEGESSGRYREVRDEDDDWSSDEF
         530       540       550




368 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:46:51 2016 done: Sat Nov  5 21:46:52 2016
 Total Scan time:  2.880 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]