FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8625, 331 aa
  1>>>pF1KB8625 331 - 331 aa - 331 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2782+/-0.000973; mu= 3.4266+/- 0.059
 mean_var=170.7035+/-33.563, 0's: 0 Z-trim(110.8): 9  B-trim: 14 in 1/52
 Lambda= 0.098164
 statistics sampled from 11878 (11883) to 11878 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.365), width:  16
 Scan time:  2.700

The best scores are:                                      opt bits E(32554)
CCDS292.1 NUDC gene_id:10726|Hs108|chr1            ( 331) 2174 319.6 2.2e-87


>>CCDS292.1 NUDC gene_id:10726|Hs108|chr1                 (331 aa)
 initn: 2174 init1: 2174 opt: 2174  Z-score: 1682.4  bits: 319.6 E(32554): 2.2e-87
Smith-Waterman score: 2174; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)

               10        20        30        40        50        60
pF1KB8 MGGEQEEERFDGMLLAMAQQHEGGVQELVNTFFSFLRRKTDFFIGGEEGMAEKLITQTFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MGGEQEEERFDGMLLAMAQQHEGGVQELVNTFFSFLRRKTDFFIGGEEGMAEKLITQTFS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HHNQLAQKTRREKRARQEAERREKAERAARLAKEAKSETSGPQIKELTDEEAERLQLEID
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 HHNQLAQKTRREKRARQEAERREKAERAARLAKEAKSETSGPQIKELTDEEAERLQLEID
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 QKKDAENHEAQLKNGSLDSPGKQDTEEDEEEDEKDKGKLKPNLGNGADLPNYRWTQTLSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 QKKDAENHEAQLKNGSLDSPGKQDTEEDEEEDEKDKGKLKPNLGNGADLPNYRWTQTLSE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 LDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 VTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 VTVHLEKINKMEWWSRLVSSDPEINTKKINPENSKLSDLDSETRSMVEKMMYDQRQKSMG
              250       260       270       280       290       300

              310       320       330 
pF1KB8 LPTSDEQKKQEILKKFMDQHPEMDFSKAKFN
       :::::::::::::::::::::::::::::::
CCDS29 LPTSDEQKKQEILKKFMDQHPEMDFSKAKFN
              310       320       330 




331 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 13:53:51 2016 done: Fri Nov  4 13:53:51 2016
 Total Scan time:  2.700 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]