Result of FASTA (ccds) for
pF1KB8627
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8627, 774 aa
1>>>pF1KB8627 774 - 774 aa - 774 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8560+/-0.000904; mu= 17.4845+/- 0.054
mean_var=76.9491+/-15.567, 0's: 0 Z-trim(106.5): 39 B-trim: 0 in 0/51
Lambda= 0.146208
statistics sampled from 8968 (9000) to 8968 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.276), width: 16
Scan time: 2.950
The best scores are: opt bits E(32554)
CCDS10591.1 LOC81691 gene_id:81691|Hs108|chr16 ( 774) 5182 1103.0 0
CCDS45437.1 LOC81691 gene_id:81691|Hs108|chr16 ( 743) 3621 773.8 0
CCDS32866.1 REXO1 gene_id:57455|Hs108|chr19 (1221) 364 86.9 2.2e-16
>>CCDS10591.1 LOC81691 gene_id:81691|Hs108|chr16 (774 aa)
initn: 5182 init1: 5182 opt: 5182 Z-score: 5903.1 bits: 1103.0 E(32554): 0
Smith-Waterman score: 5182; 100.0% identity (100.0% similar) in 774 aa overlap (1-774:1-774)
10 20 30 40 50 60
pF1KB8 MEPEREGTERHPRKVRESRQAPNKLVGAAEAMKAGWDLEESQPEAKKARLSTILFTDNCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MEPEREGTERHPRKVRESRQAPNKLVGAAEAMKAGWDLEESQPEAKKARLSTILFTDNCE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VTHDQLCELLKYAVLGKSNVPKPSWCQLFHQNHLNNVVVFVLQGMSQLHFYRFYLEFGCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VTHDQLCELLKYAVLGKSNVPKPSWCQLFHQNHLNNVVVFVLQGMSQLHFYRFYLEFGCL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RKAFRHKFRLPPPSSDFLADVVGLQTEQRAGDLPKTMEGPLPSNAKAAINLQDDPIIQKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RKAFRHKFRLPPPSSDFLADVVGLQTEQRAGDLPKTMEGPLPSNAKAAINLQDDPIIQKY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 GSKKVGLTRCLLTKEEMRTFHFPLQGFPDCENFLLTKCNGSIADNSPLFGLDCEMCLTSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GSKKVGLTRCLLTKEEMRTFHFPLQGFPDCENFLLTKCNGSIADNSPLFGLDCEMCLTSK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVTTKLKDVQRQLKAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVTTKLKDVQRQLKAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 LPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFKLKFLAKVILGKDIQCPDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFKLKFLAKVILGKDIQCPDR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 LGHDATEDARTILELARYFLKHGPKKIAELNLEALANHQEIQAAGQEPKNTAEVLQHPNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LGHDATEDARTILELARYFLKHGPKKIAELNLEALANHQEIQAAGQEPKNTAEVLQHPNT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 SVLECLDSVGQKLLFLTRETDAGELPSSRNCQTIKCLSNKEVLEQARVEIPLFPFSIVQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SVLECLDSVGQKLLFLTRETDAGELPSSRNCQTIKCLSNKEVLEQARVEIPLFPFSIVQF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 SFKAFSPVLTEEMNKRMRIKWTEISTVYAGPFSKNCNLRALKRLFKSFGPVQSMTFVLET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SFKAFSPVLTEEMNKRMRIKWTEISTVYAGPFSKNCNLRALKRLFKSFGPVQSMTFVLET
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 RQPHLCIQYEVLEAAQLAIESLDGILVDGICIKVQRPVTELTLDCDTLVNELEGDSENQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RQPHLCIQYEVLEAAQLAIESLDGILVDGICIKVQRPVTELTLDCDTLVNELEGDSENQG
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 SIYLSGVSETFKEQLLQEPRLFLGLEAVILPKDLKSGKQKKYCFLKFKSFGSAQQALNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SIYLSGVSETFKEQLLQEPRLFLGLEAVILPKDLKSGKQKKYCFLKFKSFGSAQQALNIL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB8 TGKDWKLKGRHALTPRHLHAWLRGLPPESTRLPGLRVVPPPFEQEALQTLKLDHPKIAAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TGKDWKLKGRHALTPRHLHAWLRGLPPESTRLPGLRVVPPPFEQEALQTLKLDHPKIAAW
670 680 690 700 710 720
730 740 750 760 770
pF1KB8 RWSRKIGKLYNSLCPGTLCLILLPGTKSTHGSLSGLGLMGIKEEEESAGPGLCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 RWSRKIGKLYNSLCPGTLCLILLPGTKSTHGSLSGLGLMGIKEEEESAGPGLCS
730 740 750 760 770
>>CCDS45437.1 LOC81691 gene_id:81691|Hs108|chr16 (743 aa)
initn: 3618 init1: 3618 opt: 3621 Z-score: 4123.8 bits: 773.8 E(32554): 0
Smith-Waterman score: 4906; 96.0% identity (96.0% similar) in 774 aa overlap (1-774:1-743)
10 20 30 40 50 60
pF1KB8 MEPEREGTERHPRKVRESRQAPNKLVGAAEAMKAGWDLEESQPEAKKARLSTILFTDNCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MEPEREGTERHPRKVRESRQAPNKLVGAAEAMKAGWDLEESQPEAKKARLSTILFTDNCE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 VTHDQLCELLKYAVLGKSNVPKPSWCQLFHQNHLNNVVVFVLQGMSQLHFYRFYLEFGCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 VTHDQLCELLKYAVLGKSNVPKPSWCQLFHQNHLNNVVVFVLQGMSQLHFYRFYLEFGCL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 RKAFRHKFRLPPPSSDFLADVVGLQTEQRAGDLPKTMEGPLPSNAKAAINLQDDPIIQKY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RKAFRHKFRLPPPSSDFLADVVGLQTEQRAGDLPKTMEGPLPSNAKAAINLQDDPIIQKY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 GSKKVGLTRCLLTKEEMRTFHFPLQGFPDCENFLLTKCNGSIADNSPLFGLDCEMCLTSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GSKKVGLTRCLLTKEEMRTFHFPLQGFPDCENFLLTKCNGSIADNSPLFGLDCEMCLTSK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVTTKLKDVQRQLKAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVTTKLKDVQRQLKAL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 LPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFKLKFLAKVILGKDIQCPDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFKLKFLAKVILGKDIQCPDR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 LGHDATEDARTILELARYFLKHGPKKIAELNLEALANHQEIQAAGQEPKNTAEVLQHPNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LGHDATEDARTILELARYFLKHGPKKIAELNLEALANHQEIQAAGQEPKNTAEVLQHPNT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 SVLECLDSVGQKLLFLTRETDAGELPSSRNCQTIKCLSNKEVLEQARVEIPLFPFSIVQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SVLECLDSVGQKLLFLTRETDAGELPSSRNCQTIKCLSNKEVLEQARVEIPLFPFSIVQF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 SFKAFSPVLTEEMNKRMRIKWTEISTVYAGPFSKNCNLRALKRLFKSFGPVQSMTFVLET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SFKAFSPVLTEEMNKRMRIKWTEISTVYAGPFSKNCNLRALKRLFKSFGPVQSMTFVLET
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 RQPHLCIQYEVLEAAQLAIESLDGILVDGICIKVQRPVTELTLDCDTLVNELEGDSENQG
:: :::::::::::::::::::::::::::
CCDS45 RQ-------------------------------VQRPVTELTLDCDTLVNELEGDSENQG
550 560
610 620 630 640 650 660
pF1KB8 SIYLSGVSETFKEQLLQEPRLFLGLEAVILPKDLKSGKQKKYCFLKFKSFGSAQQALNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SIYLSGVSETFKEQLLQEPRLFLGLEAVILPKDLKSGKQKKYCFLKFKSFGSAQQALNIL
570 580 590 600 610 620
670 680 690 700 710 720
pF1KB8 TGKDWKLKGRHALTPRHLHAWLRGLPPESTRLPGLRVVPPPFEQEALQTLKLDHPKIAAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TGKDWKLKGRHALTPRHLHAWLRGLPPESTRLPGLRVVPPPFEQEALQTLKLDHPKIAAW
630 640 650 660 670 680
730 740 750 760 770
pF1KB8 RWSRKIGKLYNSLCPGTLCLILLPGTKSTHGSLSGLGLMGIKEEEESAGPGLCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RWSRKIGKLYNSLCPGTLCLILLPGTKSTHGSLSGLGLMGIKEEEESAGPGLCS
690 700 710 720 730 740
>>CCDS32866.1 REXO1 gene_id:57455|Hs108|chr19 (1221 aa)
initn: 318 init1: 318 opt: 364 Z-score: 407.6 bits: 86.9 E(32554): 2.2e-16
Smith-Waterman score: 364; 38.8% identity (67.4% similar) in 178 aa overlap (211-385:1042-1218)
190 200 210 220 230
pF1KB8 GSKKVGLTRCLLTKEEMRTFHFPLQGFPDCENFLLTKCNGSIADNSP-LFGLDCEMCLTS
:.:. : . .:. : ...::::: :.
CCDS32 TQYMCCSAAAGSVGCQVAKQHVQDGRKERLEGFVKTFEKELSGDTHPGIYALDCEMSYTT
1020 1030 1040 1050 1060 1070
240 250 260 270 280 290
pF1KB8 KGRELTRISLVAEGGCCVMDELVKPENKILDYLTSFSGITKKILNPVTTKLKDVQRQLKA
: ::::...: :.: .:::.:.:.:: : :::.:. : ... :.::: : .
CCDS32 YGLELTRVTVVDTDVHVVYDTFVKPDNEIVDYNTRFSGVTEADLADTSVTLRDVQAVLLS
1080 1090 1100 1110 1120 1130
300 310 320 330 340 350
pF1KB8 LLPPDAVLVGHSLDLDLRALKMIHPYVIDTSLLYVREQGRRFK--LKFLAKVILGKDIQC
.. :..:.::::. :: :::.:: :.:::.:. .. : .: :. : : . ::
CCDS32 MFSADTILIGHSLESDLLALKVIHSTVVDTSVLFPHRLGLPYKRSLRNLMADYLRQIIQ-
1140 1150 1160 1170 1180 1190
360 370 380 390 400 410
pF1KB8 PDRLGHDATEDARTILELARYFLKHGPKKIAELNLEALANHQEIQAAGQEPKNTAEVLQH
. ::...::: . ..:. . ... :
CCDS32 DNVDGHSSSEDAGACMHLVIWKVREDAKTKR
1200 1210 1220
774 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 13:55:44 2016 done: Fri Nov 4 13:55:45 2016
Total Scan time: 2.950 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]