Result of FASTA (ccds) for
pF1KB8633
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8633, 502 aa
1>>>pF1KB8633 502 - 502 aa - 502 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.0018+/-0.000858; mu= 6.3297+/- 0.052
mean_var=146.9249+/-29.577, 0's: 0 Z-trim(112.2): 15 B-trim: 4 in 1/53
Lambda= 0.105810
statistics sampled from 12961 (12969) to 12961 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.398), width: 16
Scan time: 2.720
The best scores are: opt bits E(32554)
CCDS34753.1 ZC3HC1 gene_id:51530|Hs108|chr7 ( 502) 3428 534.8 8.2e-152
CCDS64767.1 ZC3HC1 gene_id:51530|Hs108|chr7 ( 481) 3093 483.7 2e-136
CCDS75659.1 ZC3HC1 gene_id:51530|Hs108|chr7 ( 431) 2336 368.1 1.1e-101
>>CCDS34753.1 ZC3HC1 gene_id:51530|Hs108|chr7 (502 aa)
initn: 3428 init1: 3428 opt: 3428 Z-score: 2839.0 bits: 534.8 E(32554): 8.2e-152
Smith-Waterman score: 3428; 99.6% identity (100.0% similar) in 502 aa overlap (1-502:1-502)
10 20 30 40 50 60
pF1KB8 MAAPCEGQAFAVGVEKNWGAVVRSPEGTPQKIRQLIDEGIAPEEGGVDAKDTSATSQSVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAAPCEGQAFAVGVEKNWGAVVRSPEGTPQKIRQLIDEGIAPEEGGVDAKDTSATSQSVN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GSPQAEQPSLESTSKEAFFSRVETFSSLKWAGKPFELSPLVCAKYGWVTVECDMLKCSSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GSPQAEQPSLESTSKEAFFSRVETFSSLKWAGKPFELSPLVCAKYGWVTVECDMLKCSSC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 QAFLCASLQPAFDFDRYKQRCAELKKALCTAHEKFCFWPDSPSPDRFGMLPLDEPAILVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QAFLCASLQPAFDFDRYKQRCAELKKALCTAHEKFCFWPDSPSPDRFGMLPLDEPAILVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 EFLDRFQSLCHLDLQLPSLRPEDLKTMCLTEDKISLLLHLLEDELDHRTDERKTTIKLGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 EFLDRFQSLCHLDLQLPSLRPEDLKTMCLTEDKISLLLHLLEDELDHRTDERKTTIKLGS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 DIQVHVTACILSVCGWACSSSLESMQLSLIACSQCMRKVGLWGFQQIESSMTDLDASFGL
::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
CCDS34 DIQVHVTACILSVCGWACSSSLESMQLSLITCSQCMRKVGLWGFQQIESSMTDLDASFGL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 TSSPIPGLEGRPERLPLVPESPRRMMTRSQDATFSPGSEQAEKSPGPIVSRTRSWDSSSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TSSPIPGLEGRPERLPLVPESPRRMMTRSQDATFSPGSEQAEKSPGPIVSRTRSWDSSSP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 VDHPEPEAASPTTRTRPVTRSMGTGDTPGLEVPSSPLRKAKRARLCSSSSSDTSSRSFFD
::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VDRPEPEAASPTTRTRPVTRSMGTGDTPGLEVPSSPLRKAKRARLCSSSSSDTSSRSFFD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 PTSQHRDWCPWVNITLGKESRENGGTEPDASAPAEPGWKAVLTILLAHKQSSQPAETDSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PTSQHRDWCPWVNITLGKESRENGGTEPDASAPAEPGWKAVLTILLAHKQSSQPAETDSM
430 440 450 460 470 480
490 500
pF1KB8 SLSEKSRKVFRIFRQWESLCSC
::::::::::::::::::::::
CCDS34 SLSEKSRKVFRIFRQWESLCSC
490 500
>>CCDS64767.1 ZC3HC1 gene_id:51530|Hs108|chr7 (481 aa)
initn: 3093 init1: 3093 opt: 3093 Z-score: 2562.9 bits: 483.7 E(32554): 2e-136
Smith-Waterman score: 3093; 99.6% identity (100.0% similar) in 453 aa overlap (50-502:29-481)
20 30 40 50 60 70
pF1KB8 AVVRSPEGTPQKIRQLIDEGIAPEEGGVDAKDTSATSQSVNGSPQAEQPSLESTSKEAFF
::::::::::::::::::::::::::::::
CCDS64 MRGLPRKREAWTQPHPLEALYESLRVLEKDTSATSQSVNGSPQAEQPSLESTSKEAFF
10 20 30 40 50
80 90 100 110 120 130
pF1KB8 SRVETFSSLKWAGKPFELSPLVCAKYGWVTVECDMLKCSSCQAFLCASLQPAFDFDRYKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SRVETFSSLKWAGKPFELSPLVCAKYGWVTVECDMLKCSSCQAFLCASLQPAFDFDRYKQ
60 70 80 90 100 110
140 150 160 170 180 190
pF1KB8 RCAELKKALCTAHEKFCFWPDSPSPDRFGMLPLDEPAILVSEFLDRFQSLCHLDLQLPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 RCAELKKALCTAHEKFCFWPDSPSPDRFGMLPLDEPAILVSEFLDRFQSLCHLDLQLPSL
120 130 140 150 160 170
200 210 220 230 240 250
pF1KB8 RPEDLKTMCLTEDKISLLLHLLEDELDHRTDERKTTIKLGSDIQVHVTACILSVCGWACS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 RPEDLKTMCLTEDKISLLLHLLEDELDHRTDERKTTIKLGSDIQVHVTACILSVCGWACS
180 190 200 210 220 230
260 270 280 290 300 310
pF1KB8 SSLESMQLSLIACSQCMRKVGLWGFQQIESSMTDLDASFGLTSSPIPGLEGRPERLPLVP
:::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SSLESMQLSLITCSQCMRKVGLWGFQQIESSMTDLDASFGLTSSPIPGLEGRPERLPLVP
240 250 260 270 280 290
320 330 340 350 360 370
pF1KB8 ESPRRMMTRSQDATFSPGSEQAEKSPGPIVSRTRSWDSSSPVDHPEPEAASPTTRTRPVT
:::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::
CCDS64 ESPRRMMTRSQDATFSPGSEQAEKSPGPIVSRTRSWDSSSPVDRPEPEAASPTTRTRPVT
300 310 320 330 340 350
380 390 400 410 420 430
pF1KB8 RSMGTGDTPGLEVPSSPLRKAKRARLCSSSSSDTSSRSFFDPTSQHRDWCPWVNITLGKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 RSMGTGDTPGLEVPSSPLRKAKRARLCSSSSSDTSSRSFFDPTSQHRDWCPWVNITLGKE
360 370 380 390 400 410
440 450 460 470 480 490
pF1KB8 SRENGGTEPDASAPAEPGWKAVLTILLAHKQSSQPAETDSMSLSEKSRKVFRIFRQWESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 SRENGGTEPDASAPAEPGWKAVLTILLAHKQSSQPAETDSMSLSEKSRKVFRIFRQWESL
420 430 440 450 460 470
500
pF1KB8 CSC
:::
CCDS64 CSC
480
>>CCDS75659.1 ZC3HC1 gene_id:51530|Hs108|chr7 (431 aa)
initn: 2330 init1: 2330 opt: 2336 Z-score: 1939.1 bits: 368.1 E(32554): 1.1e-101
Smith-Waterman score: 2812; 85.7% identity (85.9% similar) in 502 aa overlap (1-502:1-431)
10 20 30 40 50 60
pF1KB8 MAAPCEGQAFAVGVEKNWGAVVRSPEGTPQKIRQLIDEGIAPEEGGVDAKDTSATSQSVN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MAAPCEGQAFAVGVEKNWGAVVRSPEGTPQKIRQLIDEGIAPEEGGVDAKDTSATSQSVN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 GSPQAEQPSLESTSKEAFFSRVETFSSLKWAGKPFELSPLVCAKYGWVTVECDMLKCSSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GSPQAEQPSLESTSKEAFFSRVETFSSLKWAGKPFELSPLVCAKYGWVTVECDMLKCSSC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 QAFLCASLQPAFDFDRYKQRCAELKKALCTAHEKFCFWPDSPSPDRFGMLPLDEPAILVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QAFLCASLQPAFDFDRYKQRCAELKKALCTAHEKFCFWPDSPSPDRFGMLPLDEPAILVS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 EFLDRFQSLCHLDLQLPSLRPEDLKTMCLTEDKISLLLHLLEDELDHRTDERKTTIKLGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 EFLDRFQSLCHLDLQLPSLRPEDLKTMCLTEDKISLLLHLLEDELDHRTDERKTTIKLGS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 DIQVHVTACILSVCGWACSSSLESMQLSLIACSQCMRKVGLWGFQQIESSMTDLDASFGL
::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
CCDS75 DIQVHVTACILSVCGWACSSSLESMQLSLITCSQCMRKVGLWGFQQIESSMTDLDASFGL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 TSSPIPGLEGRPERLPLVPESPRRMMTRSQDATFSPGSEQAEKSPGPIVSRTRSWDSSSP
::::::::::::::::::::::::::::::::::::::::
CCDS75 TSSPIPGLEGRPERLPLVPESPRRMMTRSQDATFSPGSEQ--------------------
310 320 330 340
370 380 390 400 410 420
pF1KB8 VDHPEPEAASPTTRTRPVTRSMGTGDTPGLEVPSSPLRKAKRARLCSSSSSDTSSRSFFD
:::::::::
CCDS75 ---------------------------------------------------DTSSRSFFD
430 440 450 460 470 480
pF1KB8 PTSQHRDWCPWVNITLGKESRENGGTEPDASAPAEPGWKAVLTILLAHKQSSQPAETDSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PTSQHRDWCPWVNITLGKESRENGGTEPDASAPAEPGWKAVLTILLAHKQSSQPAETDSM
350 360 370 380 390 400
490 500
pF1KB8 SLSEKSRKVFRIFRQWESLCSC
::::::::::::::::::::::
CCDS75 SLSEKSRKVFRIFRQWESLCSC
410 420 430
502 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 14:01:46 2016 done: Fri Nov 4 14:01:46 2016
Total Scan time: 2.720 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]