Result of FASTA (omim) for
pF1KB8634
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8634, 341 aa
1>>>pF1KB8634 341 - 341 aa - 341 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0429+/-0.000349; mu= 17.9606+/- 0.022
mean_var=68.4706+/-13.410, 0's: 0 Z-trim(114.2): 36 B-trim: 200 in 1/53
Lambda= 0.154997
statistics sampled from 23897 (23933) to 23897 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.281), width: 16
Scan time: 6.410
The best scores are: opt bits E(85289)
NP_659449 (OMIM: 612786) cyclin-Y isoform 1 [Homo ( 341) 2279 518.5 8.1e-147
XP_006717455 (OMIM: 612786) PREDICTED: cyclin-Y is ( 317) 1920 438.2 1.1e-122
XP_011517663 (OMIM: 612786) PREDICTED: cyclin-Y is ( 287) 1908 435.5 6.7e-122
XP_011517665 (OMIM: 612786) PREDICTED: cyclin-Y is ( 287) 1908 435.5 6.7e-122
XP_011517660 (OMIM: 612786) PREDICTED: cyclin-Y is ( 287) 1908 435.5 6.7e-122
XP_011517664 (OMIM: 612786) PREDICTED: cyclin-Y is ( 287) 1908 435.5 6.7e-122
XP_011517662 (OMIM: 612786) PREDICTED: cyclin-Y is ( 287) 1908 435.5 6.7e-122
XP_011517669 (OMIM: 612786) PREDICTED: cyclin-Y is ( 287) 1908 435.5 6.7e-122
NP_001269782 (OMIM: 612786) cyclin-Y isoform 2 [Ho ( 287) 1908 435.5 6.7e-122
XP_011517670 (OMIM: 612786) PREDICTED: cyclin-Y is ( 287) 1908 435.5 6.7e-122
XP_011517668 (OMIM: 612786) PREDICTED: cyclin-Y is ( 287) 1908 435.5 6.7e-122
NP_859049 (OMIM: 612786) cyclin-Y isoform 2 [Homo ( 287) 1908 435.5 6.7e-122
XP_016871328 (OMIM: 612786) PREDICTED: cyclin-Y is ( 287) 1908 435.5 6.7e-122
XP_011517666 (OMIM: 612786) PREDICTED: cyclin-Y is ( 287) 1908 435.5 6.7e-122
XP_016871329 (OMIM: 612786) PREDICTED: cyclin-Y is ( 287) 1908 435.5 6.7e-122
XP_016871330 (OMIM: 612786) PREDICTED: cyclin-Y is ( 287) 1908 435.5 6.7e-122
XP_011517667 (OMIM: 612786) PREDICTED: cyclin-Y is ( 287) 1908 435.5 6.7e-122
NP_001269781 (OMIM: 612786) cyclin-Y isoform 3 [Ho ( 316) 1770 404.7 1.4e-112
NP_001269783 (OMIM: 612786) cyclin-Y isoform 5 [Ho ( 208) 1373 315.8 5.3e-86
XP_011517659 (OMIM: 612786) PREDICTED: cyclin-Y is ( 329) 1375 316.4 5.6e-86
XP_011517671 (OMIM: 612786) PREDICTED: cyclin-Y is ( 202) 1332 306.6 3e-83
>>NP_659449 (OMIM: 612786) cyclin-Y isoform 1 [Homo sapi (341 aa)
initn: 2279 init1: 2279 opt: 2279 Z-score: 2756.8 bits: 518.5 E(85289): 8.1e-147
Smith-Waterman score: 2279; 100.0% identity (100.0% similar) in 341 aa overlap (1-341:1-341)
10 20 30 40 50 60
pF1KB8 MGNTTSCCVSSSPKLRRNAHSRLESYRPDTDLSREDTGCNLQHISDRENIDDLNMEFNPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 MGNTTSCCVSSSPKLRRNAHSRLESYRPDTDLSREDTGCNLQHISDRENIDDLNMEFNPS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 DHPRASTIFLSKSQTDVREKRKSLFINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 DHPRASTIFLSKSQTDVREKRKSLFINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 KCVALAIYYHIKNRDPDGRMLLDIFDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 KCVALAIYYHIKNRDPDGRMLLDIFDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 AAQLTAECAIVTLVYLERLLTYAEIDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 AAQLTAECAIVTLVYLERLLTYAEIDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 LKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 LKDITVEDMNELERQFLELLQFNINVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAH
250 260 270 280 290 300
310 320 330 340
pF1KB8 KLEAISRLCEDKYKDLRRSARKRSASADNLTLPRWSPAIIS
:::::::::::::::::::::::::::::::::::::::::
NP_659 KLEAISRLCEDKYKDLRRSARKRSASADNLTLPRWSPAIIS
310 320 330 340
>>XP_006717455 (OMIM: 612786) PREDICTED: cyclin-Y isofor (317 aa)
initn: 1920 init1: 1920 opt: 1920 Z-score: 2323.4 bits: 438.2 E(85289): 1.1e-122
Smith-Waterman score: 1920; 100.0% identity (100.0% similar) in 289 aa overlap (53-341:29-317)
30 40 50 60 70 80
pF1KB8 LESYRPDTDLSREDTGCNLQHISDRENIDDLNMEFNPSDHPRASTIFLSKSQTDVREKRK
::::::::::::::::::::::::::::::
XP_006 MKADEAHIANVMQMWTFIVALVFTHKGYLNMEFNPSDHPRASTIFLSKSQTDVREKRK
10 20 30 40 50
90 100 110 120 130 140
pF1KB8 SLFINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SLFINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLL
60 70 80 90 100 110
150 160 170 180 190 200
pF1KB8 DIFDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DIFDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTY
120 130 140 150 160 170
210 220 230 240 250 260
pF1KB8 AEIDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AEIDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQF
180 190 200 210 220 230
270 280 290 300 310 320
pF1KB8 NINVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKYKDLRRSARK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NINVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKYKDLRRSARK
240 250 260 270 280 290
330 340
pF1KB8 RSASADNLTLPRWSPAIIS
:::::::::::::::::::
XP_006 RSASADNLTLPRWSPAIIS
300 310
>>XP_011517663 (OMIM: 612786) PREDICTED: cyclin-Y isofor (287 aa)
initn: 1908 init1: 1908 opt: 1908 Z-score: 2309.5 bits: 435.5 E(85289): 6.7e-122
Smith-Waterman score: 1908; 100.0% identity (100.0% similar) in 287 aa overlap (55-341:1-287)
30 40 50 60 70 80
pF1KB8 SYRPDTDLSREDTGCNLQHISDRENIDDLNMEFNPSDHPRASTIFLSKSQTDVREKRKSL
::::::::::::::::::::::::::::::
XP_011 MEFNPSDHPRASTIFLSKSQTDVREKRKSL
10 20 30
90 100 110 120 130 140
pF1KB8 FINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDI
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB8 FDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAE
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB8 IDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNI
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB8 NVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKYKDLRRSARKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKYKDLRRSARKRS
220 230 240 250 260 270
330 340
pF1KB8 ASADNLTLPRWSPAIIS
:::::::::::::::::
XP_011 ASADNLTLPRWSPAIIS
280
>>XP_011517665 (OMIM: 612786) PREDICTED: cyclin-Y isofor (287 aa)
initn: 1908 init1: 1908 opt: 1908 Z-score: 2309.5 bits: 435.5 E(85289): 6.7e-122
Smith-Waterman score: 1908; 100.0% identity (100.0% similar) in 287 aa overlap (55-341:1-287)
30 40 50 60 70 80
pF1KB8 SYRPDTDLSREDTGCNLQHISDRENIDDLNMEFNPSDHPRASTIFLSKSQTDVREKRKSL
::::::::::::::::::::::::::::::
XP_011 MEFNPSDHPRASTIFLSKSQTDVREKRKSL
10 20 30
90 100 110 120 130 140
pF1KB8 FINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDI
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB8 FDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAE
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB8 IDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNI
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB8 NVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKYKDLRRSARKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKYKDLRRSARKRS
220 230 240 250 260 270
330 340
pF1KB8 ASADNLTLPRWSPAIIS
:::::::::::::::::
XP_011 ASADNLTLPRWSPAIIS
280
>>XP_011517660 (OMIM: 612786) PREDICTED: cyclin-Y isofor (287 aa)
initn: 1908 init1: 1908 opt: 1908 Z-score: 2309.5 bits: 435.5 E(85289): 6.7e-122
Smith-Waterman score: 1908; 100.0% identity (100.0% similar) in 287 aa overlap (55-341:1-287)
30 40 50 60 70 80
pF1KB8 SYRPDTDLSREDTGCNLQHISDRENIDDLNMEFNPSDHPRASTIFLSKSQTDVREKRKSL
::::::::::::::::::::::::::::::
XP_011 MEFNPSDHPRASTIFLSKSQTDVREKRKSL
10 20 30
90 100 110 120 130 140
pF1KB8 FINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDI
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB8 FDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAE
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB8 IDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNI
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB8 NVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKYKDLRRSARKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKYKDLRRSARKRS
220 230 240 250 260 270
330 340
pF1KB8 ASADNLTLPRWSPAIIS
:::::::::::::::::
XP_011 ASADNLTLPRWSPAIIS
280
>>XP_011517664 (OMIM: 612786) PREDICTED: cyclin-Y isofor (287 aa)
initn: 1908 init1: 1908 opt: 1908 Z-score: 2309.5 bits: 435.5 E(85289): 6.7e-122
Smith-Waterman score: 1908; 100.0% identity (100.0% similar) in 287 aa overlap (55-341:1-287)
30 40 50 60 70 80
pF1KB8 SYRPDTDLSREDTGCNLQHISDRENIDDLNMEFNPSDHPRASTIFLSKSQTDVREKRKSL
::::::::::::::::::::::::::::::
XP_011 MEFNPSDHPRASTIFLSKSQTDVREKRKSL
10 20 30
90 100 110 120 130 140
pF1KB8 FINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDI
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB8 FDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAE
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB8 IDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNI
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB8 NVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKYKDLRRSARKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKYKDLRRSARKRS
220 230 240 250 260 270
330 340
pF1KB8 ASADNLTLPRWSPAIIS
:::::::::::::::::
XP_011 ASADNLTLPRWSPAIIS
280
>>XP_011517662 (OMIM: 612786) PREDICTED: cyclin-Y isofor (287 aa)
initn: 1908 init1: 1908 opt: 1908 Z-score: 2309.5 bits: 435.5 E(85289): 6.7e-122
Smith-Waterman score: 1908; 100.0% identity (100.0% similar) in 287 aa overlap (55-341:1-287)
30 40 50 60 70 80
pF1KB8 SYRPDTDLSREDTGCNLQHISDRENIDDLNMEFNPSDHPRASTIFLSKSQTDVREKRKSL
::::::::::::::::::::::::::::::
XP_011 MEFNPSDHPRASTIFLSKSQTDVREKRKSL
10 20 30
90 100 110 120 130 140
pF1KB8 FINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDI
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB8 FDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAE
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB8 IDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNI
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB8 NVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKYKDLRRSARKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKYKDLRRSARKRS
220 230 240 250 260 270
330 340
pF1KB8 ASADNLTLPRWSPAIIS
:::::::::::::::::
XP_011 ASADNLTLPRWSPAIIS
280
>>XP_011517669 (OMIM: 612786) PREDICTED: cyclin-Y isofor (287 aa)
initn: 1908 init1: 1908 opt: 1908 Z-score: 2309.5 bits: 435.5 E(85289): 6.7e-122
Smith-Waterman score: 1908; 100.0% identity (100.0% similar) in 287 aa overlap (55-341:1-287)
30 40 50 60 70 80
pF1KB8 SYRPDTDLSREDTGCNLQHISDRENIDDLNMEFNPSDHPRASTIFLSKSQTDVREKRKSL
::::::::::::::::::::::::::::::
XP_011 MEFNPSDHPRASTIFLSKSQTDVREKRKSL
10 20 30
90 100 110 120 130 140
pF1KB8 FINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDI
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB8 FDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAE
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB8 IDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNI
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB8 NVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKYKDLRRSARKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKYKDLRRSARKRS
220 230 240 250 260 270
330 340
pF1KB8 ASADNLTLPRWSPAIIS
:::::::::::::::::
XP_011 ASADNLTLPRWSPAIIS
280
>>NP_001269782 (OMIM: 612786) cyclin-Y isoform 2 [Homo s (287 aa)
initn: 1908 init1: 1908 opt: 1908 Z-score: 2309.5 bits: 435.5 E(85289): 6.7e-122
Smith-Waterman score: 1908; 100.0% identity (100.0% similar) in 287 aa overlap (55-341:1-287)
30 40 50 60 70 80
pF1KB8 SYRPDTDLSREDTGCNLQHISDRENIDDLNMEFNPSDHPRASTIFLSKSQTDVREKRKSL
::::::::::::::::::::::::::::::
NP_001 MEFNPSDHPRASTIFLSKSQTDVREKRKSL
10 20 30
90 100 110 120 130 140
pF1KB8 FINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDI
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB8 FDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAE
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB8 IDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNI
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB8 NVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKYKDLRRSARKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKYKDLRRSARKRS
220 230 240 250 260 270
330 340
pF1KB8 ASADNLTLPRWSPAIIS
:::::::::::::::::
NP_001 ASADNLTLPRWSPAIIS
280
>>XP_011517670 (OMIM: 612786) PREDICTED: cyclin-Y isofor (287 aa)
initn: 1908 init1: 1908 opt: 1908 Z-score: 2309.5 bits: 435.5 E(85289): 6.7e-122
Smith-Waterman score: 1908; 100.0% identity (100.0% similar) in 287 aa overlap (55-341:1-287)
30 40 50 60 70 80
pF1KB8 SYRPDTDLSREDTGCNLQHISDRENIDDLNMEFNPSDHPRASTIFLSKSQTDVREKRKSL
::::::::::::::::::::::::::::::
XP_011 MEFNPSDHPRASTIFLSKSQTDVREKRKSL
10 20 30
90 100 110 120 130 140
pF1KB8 FINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FINHHPPGQIARKYSSCSTIFLDDSTVSQPNLKYTIKCVALAIYYHIKNRDPDGRMLLDI
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB8 FDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FDENLHPLSKSEVPPDYDKHNPEQKQIYRFVRTLFSAAQLTAECAIVTLVYLERLLTYAE
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB8 IDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IDICPANWKRIVLGAILLASKVWDDQAVWNVDYCQILKDITVEDMNELERQFLELLQFNI
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB8 NVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKYKDLRRSARKRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NVPSSVYAKYYFDLRSLAEANNLSFPLEPLSRERAHKLEAISRLCEDKYKDLRRSARKRS
220 230 240 250 260 270
330 340
pF1KB8 ASADNLTLPRWSPAIIS
:::::::::::::::::
XP_011 ASADNLTLPRWSPAIIS
280
341 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 14:03:36 2016 done: Fri Nov 4 14:03:37 2016
Total Scan time: 6.410 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]