FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8635, 241 aa
  1>>>pF1KB8635 241 - 241 aa - 241 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.4358+/-0.000272; mu= 7.0255+/- 0.017
 mean_var=166.5941+/-33.906, 0's: 0 Z-trim(124.0): 3  B-trim: 2389 in 1/56
 Lambda= 0.099368
 statistics sampled from 44721 (44725) to 44721 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.829), E-opt: 0.2 (0.524), width:  16
 Scan time:  7.490

The best scores are:                                      opt bits E(85289)
NP_976307 (OMIM: 609088) F-box and leucine-rich pr ( 247) 1678 251.3 1.1e-66
XP_016877575 (OMIM: 609088) PREDICTED: F-box and l ( 142)  782 122.6 3.5e-28
XP_005254377 (OMIM: 609088) PREDICTED: F-box and l ( 231)  773 121.5 1.2e-27


>>NP_976307 (OMIM: 609088) F-box and leucine-rich protei  (247 aa)
 initn: 1678 init1: 1678 opt: 1678  Z-score: 1317.9  bits: 251.3 E(85289): 1.1e-66
Smith-Waterman score: 1678; 99.6% identity (99.6% similar) in 241 aa overlap (1-241:7-247)

                     10        20        30        40        50    
pF1KB8       MHITQLNRECLLHLFSFLDKDSRKSLARTCSQLHDVFEDPALWSLLHFRSLTEL
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 MWPLLTMHITQLNRECLLHLFSFLDKDSRKSLARTCSQLHDVFEDPALWSLLHFRSLTEL
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KB8 QKDNFLLGPALRSLSICWHSSRVQVCSIEDWLKSAFQRSICSRHESLVNDFLLRVCDRLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 QKDNFLLGPALRSLSICWHSSRVQVCSIEDWLKSAFQRSICSRHESLVNDFLLRVCDRLS
               70        80        90       100       110       120

          120       130       140       150       160       170    
pF1KB8 AVRSPRRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 AVRSPRRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAE
              130       140       150       160       170       180

          180       190       200       210       220       230    
pF1KB8 RPSETPPAPGVSWGPPPPGALVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFP
       :::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::
NP_976 RPSETPPAPGVSWGPPPPGAPVVISVKQEEGKQGRTGRRSHRAAPPCGFARTRVCPPTFP
              190       200       210       220       230       240

          240 
pF1KB8 GADAFPQ
       :::::::
NP_976 GADAFPQ
              

>>XP_016877575 (OMIM: 609088) PREDICTED: F-box and leuci  (142 aa)
 initn: 794 init1: 774 opt: 782  Z-score: 626.9  bits: 122.6 E(85289): 3.5e-28
Smith-Waterman score: 782; 90.6% identity (93.7% similar) in 127 aa overlap (1-127:7-133)

                     10        20        30        40        50    
pF1KB8       MHITQLNRECLLHLFSFLDKDSRKSLARTCSQLHDVFEDPALWSLLHFRSLTEL
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MWPLLTMHITQLNRECLLHLFSFLDKDSRKSLARTCSQLHDVFEDPALWSLLHFRSLTEL
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KB8 QKDNFLLGPALRSLSICWHSSRVQVCSIEDWLKSAFQRSICSRHESLVNDFLLRVCDRLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. 
XP_016 QKDNFLLGPALRSLSICWHSSRVQVCSIEDWLKSAFQRSICSRHESLVNDFLLRVCDRFF
               70        80        90       100       110       120

          120       130       140       150       160       170    
pF1KB8 AVRSPRRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAE
         :.  .  .: :                                               
XP_016 IGRARWHYCGPLPPCLVESPST                                      
              130       140                                        

>>XP_005254377 (OMIM: 609088) PREDICTED: F-box and leuci  (231 aa)
 initn: 811 init1: 773 opt: 773  Z-score: 617.1  bits: 121.5 E(85289): 1.2e-27
Smith-Waterman score: 773; 100.0% identity (100.0% similar) in 112 aa overlap (1-112:7-118)

                     10        20        30        40        50    
pF1KB8       MHITQLNRECLLHLFSFLDKDSRKSLARTCSQLHDVFEDPALWSLLHFRSLTEL
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MWPLLTMHITQLNRECLLHLFSFLDKDSRKSLARTCSQLHDVFEDPALWSLLHFRSLTEL
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KB8 QKDNFLLGPALRSLSICWHSSRVQVCSIEDWLKSAFQRSICSRHESLVNDFLLRVCDRLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
XP_005 QKDNFLLGPALRSLSICWHSSRVQVCSIEDWLKSAFQRSICSRHESLVNDFLLRVCDRCP
               70        80        90       100       110       120

          120       130       140       150       160       170    
pF1KB8 AVRSPRRREAPAPSSGTPIAVGPKSPRWGGPDHSEFADLRSGVTGARAAARRGLGSLRAE
                                                                   
XP_005 NLASVTLSGCGHVTDDCLARLLRCCPRLRALRLENCARVTNRTLAAVAADGRALQTLHVD
              130       140       150       160       170       180




241 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:44:02 2016 done: Sat Nov  5 21:44:03 2016
 Total Scan time:  7.490 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]