FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8640, 203 aa
  1>>>pF1KB8640 203 - 203 aa - 203 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1279+/-0.00064; mu= 15.6252+/- 0.039
 mean_var=79.3148+/-16.025, 0's: 0 Z-trim(113.8): 90  B-trim: 936 in 2/52
 Lambda= 0.144012
 statistics sampled from 14286 (14398) to 14286 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.79), E-opt: 0.2 (0.442), width:  16
 Scan time:  2.310

The best scores are:                                      opt bits E(32554)
CCDS13854.1 RASL10A gene_id:10633|Hs108|chr22      ( 203) 1416 302.6 1.1e-82
CCDS11297.1 RASL10B gene_id:91608|Hs108|chr17      ( 203)  676 148.9   2e-36


>>CCDS13854.1 RASL10A gene_id:10633|Hs108|chr22           (203 aa)
 initn: 1416 init1: 1416 opt: 1416  Z-score: 1598.2  bits: 302.6 E(32554): 1.1e-82
Smith-Waterman score: 1416; 99.5% identity (100.0% similar) in 203 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KB8 MGGSLRVAVLGAPGVGKTAIIRQFVFGDYPERHRPTDGPRLYRPAVLLDGAVYDLSIRDG
       ::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS13 MGGSLRVAVLGAPGVGKTAIIRQFLFGDYPERHRPTDGPRLYRPAVLLDGAVYDLSIRDG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DVAGPGSSPGGPEEWPDAKDWSLQDTDAFVLVYDICSPDSFDYVKALRQRIAETRPAGAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DVAGPGSSPGGPEEWPDAKDWSLQDTDAFVLVYDICSPDSFDYVKALRQRIAETRPAGAP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 EAPILVVGNKRDRQRLRFGPRRALAALVRRGWRCGYLECSAKYNWHVLRLFRELLRCALV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EAPILVVGNKRDRQRLRFGPRRALAALVRRGWRCGYLECSAKYNWHVLRLFRELLRCALV
              130       140       150       160       170       180

              190       200   
pF1KB8 RARPAHPALRLQGALHPARCSLM
       :::::::::::::::::::::::
CCDS13 RARPAHPALRLQGALHPARCSLM
              190       200   

>>CCDS11297.1 RASL10B gene_id:91608|Hs108|chr17           (203 aa)
 initn: 615 init1: 426 opt: 676  Z-score: 767.3  bits: 148.9 E(32554): 2e-36
Smith-Waterman score: 676; 52.4% identity (74.5% similar) in 208 aa overlap (1-203:1-203)

               10        20        30        40        50        60
pF1KB8 MGGSLRVAVLGAPGVGKTAIIRQFVFGDYPERHRPTDGPRLYRPAVLLDGAVYDLSIRDG
       : .. ::::::: ::::.::.:::..... :   :: . ::: :::...: :.::.: : 
CCDS11 MVSTYRVAVLGARGVGKSAIVRQFLYNEFSEVCVPTTARRLYLPAVVMNGHVHDLQILD-
               10        20        30        40        50          

                70         80        90       100       110        
pF1KB8 DVAGPGSS-PGGP-EEWPDAKDWSLQDTDAFVLVYDICSPDSFDYVKALRQRIAETRPAG
           : :. : .  .:: :.   .:... :..::::::  :::.:::..::.: :::  :
CCDS11 --FPPISAFPVNTLQEWADTCCRGLRSVHAYILVYDICCFDSFEYVKTIRQQILETRVIG
        60        70        80        90       100       110       

      120       130       140       150       160       170        
pF1KB8 APEAPILVVGNKRDRQRLRFGPRRALAALVRRGWRCGYLECSAKYNWHVLRLFRELLR--
       . :.::..:::::: :: :  ::  .. :::. :.:::.:::::::::.: :: :::.  
CCDS11 TSETPIIIVGNKRDLQRGRVIPRWNVSHLVRKTWKCGYVECSAKYNWHILLLFSELLKSV
       120       130       140       150       160       170       

         180       190       200   
pF1KB8 -CALVRARPAHPALRLQGALHPARCSLM
        ::  : . .: :::.::::.  ::..:
CCDS11 GCA--RCKHVHAALRFQGALRRNRCAIM
       180         190       200   




203 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:31:39 2016 done: Sat Nov  5 21:31:40 2016
 Total Scan time:  2.310 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]