FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8656, 567 aa
  1>>>pF1KB8656 567 - 567 aa - 567 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0836+/-0.000974; mu= 10.4011+/- 0.059
 mean_var=96.4232+/-19.344, 0's: 0 Z-trim(106.6): 17  B-trim: 4 in 1/50
 Lambda= 0.130612
 statistics sampled from 9069 (9074) to 9069 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.279), width:  16
 Scan time:  2.830

The best scores are:                                      opt bits E(32554)
CCDS32132.1 SPATA7 gene_id:55812|Hs108|chr14       ( 567) 3668 701.7  6e-202
CCDS9883.1 SPATA7 gene_id:55812|Hs108|chr14        ( 599) 3460 662.5  4e-190


>>CCDS32132.1 SPATA7 gene_id:55812|Hs108|chr14            (567 aa)
 initn: 3668 init1: 3668 opt: 3668  Z-score: 3739.0  bits: 701.7 E(32554): 6e-202
Smith-Waterman score: 3668; 99.3% identity (99.8% similar) in 567 aa overlap (1-567:1-567)

               10        20        30        40        50        60
pF1KB8 MDGSRRVRATSVLPRYGPPCLFKGHLSTKSNAAVDCSVPVSMSTSIKYADQQRREKLKKE
       :::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::
CCDS32 MDGSRRVRATSVLPRYGPPCLFKGHLSTKSNAAVDCSVPVSVSTSIKYADQQRREKLKKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LAQCEKEFKLTKTAMRANYKNNSKSLFNTLQEPSGEPQIEDDMLKEEMNGFSSFARSLVP
       :::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::
CCDS32 LAQCEKEFKLTKTAMRANYKNNSKSLFNTLQKPSGEPQIEDDMLKEEMNGFSSFARSLVP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 SSERLHLSLHKSSKVITNGPEKNSSSSPSSVDYAASGPRKLSSGALYGRRPRSTFPNSHR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSERLHLSLHKSSKVITNGPEKNSSSSPSSVDYAASGPRKLSSGALYGRRPRSTFPNSHR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 FQLVISKAPSGDLLDKHSELFSNKQLPFTPRTLKTEAKSFLSQYRYYTPAKRKKDFTDQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FQLVISKAPSGDLLDKHSELFSNKQLPFTPRTLKTEAKSFLSQYRYYTPAKRKKDFTDQR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 IEAETQTELSFKSELGTAETKNMTDSEMNIKQASNCVTYDAKEKIAPLPLEGHDSTWDEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IEAETQTELSFKSELGTAETKNMTDSEMNIKQASNCVTYDAKEKIAPLPLEGHDSTWDEI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 KDDALQHSSPRAMCQYSLKPPSTRKIYSDEEELLYLSFIEDVTDEILKLGLFSNRFLERL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KDDALQHSSPRAMCQYSLKPPSTRKIYSDEEELLYLSFIEDVTDEILKLGLFSNRFLERL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 FERHIKQNKHLEGEKMRHLLHVLKVDLGCTSEENSVKQNDVDMLNVFDFEKAGNSEPNKL
       :::::::::::: :::::::::::::::::::::::::::::::::::::::::::::.:
CCDS32 FERHIKQNKHLEEEKMRHLLHVLKVDLGCTSEENSVKQNDVDMLNVFDFEKAGNSEPNEL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB8 KNESEVTIQQERQQYQKALDMLLSAPKDENEIFPSPTEFFMPIYKSKHSEGVIIQQVNDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KNESEVTIQQERQQYQKALDMLLSAPKDENEIFPSPTEFFMPIYKSKHSEGVIIQQVNDE
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB8 TNLETSTLDENHPSISDSLTDRETSVNVIEGDSDPEKVEISNGLCGLNTSPSQSVQFSSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TNLETSTLDENHPSISDSLTDRETSVNVIEGDSDPEKVEISNGLCGLNTSPSQSVQFSSV
              490       500       510       520       530       540

              550       560       
pF1KB8 KGDNNHDMELSTLKIMEMSIEDCPLDV
       :::::::::::::::::::::::::::
CCDS32 KGDNNHDMELSTLKIMEMSIEDCPLDV
              550       560       

>>CCDS9883.1 SPATA7 gene_id:55812|Hs108|chr14             (599 aa)
 initn: 3454 init1: 3454 opt: 3460  Z-score: 3526.8  bits: 662.5 E(32554): 4e-190
Smith-Waterman score: 3594; 94.0% identity (94.5% similar) in 599 aa overlap (1-567:1-599)

               10        20        30                              
pF1KB8 MDGSRRVRATSVLPRYGPPCLFKGHLSTKSNA----------------------------
       ::::::::::::::::::::::::::::::::                            
CCDS98 MDGSRRVRATSVLPRYGPPCLFKGHLSTKSNAFCTDSSSLRLSTLQLVKNHMAVHYNKIL
               10        20        30        40        50        60

                 40        50        60        70        80        
pF1KB8 ----AVDCSVPVSMSTSIKYADQQRREKLKKELAQCEKEFKLTKTAMRANYKNNSKSLFN
           :::::::::.::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 SAKAAVDCSVPVSVSTSIKYADQQRREKLKKELAQCEKEFKLTKTAMRANYKNNSKSLFN
               70        80        90       100       110       120

       90       100       110       120       130       140        
pF1KB8 TLQEPSGEPQIEDDMLKEEMNGFSSFARSLVPSSERLHLSLHKSSKVITNGPEKNSSSSP
       :::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 TLQKPSGEPQIEDDMLKEEMNGFSSFARSLVPSSERLHLSLHKSSKVITNGPEKNSSSSP
              130       140       150       160       170       180

      150       160       170       180       190       200        
pF1KB8 SSVDYAASGPRKLSSGALYGRRPRSTFPNSHRFQLVISKAPSGDLLDKHSELFSNKQLPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 SSVDYAASGPRKLSSGALYGRRPRSTFPNSHRFQLVISKAPSGDLLDKHSELFSNKQLPF
              190       200       210       220       230       240

      210       220       230       240       250       260        
pF1KB8 TPRTLKTEAKSFLSQYRYYTPAKRKKDFTDQRIEAETQTELSFKSELGTAETKNMTDSEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 TPRTLKTEAKSFLSQYRYYTPAKRKKDFTDQRIEAETQTELSFKSELGTAETKNMTDSEM
              250       260       270       280       290       300

      270       280       290       300       310       320        
pF1KB8 NIKQASNCVTYDAKEKIAPLPLEGHDSTWDEIKDDALQHSSPRAMCQYSLKPPSTRKIYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 NIKQASNCVTYDAKEKIAPLPLEGHDSTWDEIKDDALQHSSPRAMCQYSLKPPSTRKIYS
              310       320       330       340       350       360

      330       340       350       360       370       380        
pF1KB8 DEEELLYLSFIEDVTDEILKLGLFSNRFLERLFERHIKQNKHLEGEKMRHLLHVLKVDLG
       :::::::::::::::::::::::::::::::::::::::::::: :::::::::::::::
CCDS98 DEEELLYLSFIEDVTDEILKLGLFSNRFLERLFERHIKQNKHLEEEKMRHLLHVLKVDLG
              370       380       390       400       410       420

      390       400       410       420       430       440        
pF1KB8 CTSEENSVKQNDVDMLNVFDFEKAGNSEPNKLKNESEVTIQQERQQYQKALDMLLSAPKD
       ::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
CCDS98 CTSEENSVKQNDVDMLNVFDFEKAGNSEPNELKNESEVTIQQERQQYQKALDMLLSAPKD
              430       440       450       460       470       480

      450       460       470       480       490       500        
pF1KB8 ENEIFPSPTEFFMPIYKSKHSEGVIIQQVNDETNLETSTLDENHPSISDSLTDRETSVNV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 ENEIFPSPTEFFMPIYKSKHSEGVIIQQVNDETNLETSTLDENHPSISDSLTDRETSVNV
              490       500       510       520       530       540

      510       520       530       540       550       560       
pF1KB8 IEGDSDPEKVEISNGLCGLNTSPSQSVQFSSVKGDNNHDMELSTLKIMEMSIEDCPLDV
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 IEGDSDPEKVEISNGLCGLNTSPSQSVQFSSVKGDNNHDMELSTLKIMEMSIEDCPLDV
              550       560       570       580       590         




567 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 14:13:12 2016 done: Fri Nov  4 14:13:13 2016
 Total Scan time:  2.830 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]